Chr:
Chr10
Start:
14869103
End:
14872501
Strand:
-
Ref_name:
LOC4348653
Sequence
(XR_001540289.2):
GCCACACACGCUGGAAGGGGAUCGAUGAACAGAAAUAUAAUCUGGCUUUGCCAUGGCUCUCUUCCUCCUCCAACUCUGCCUCCCCUAAUUUCUAUUUCUCUAAUCCUAGUCUCAUGCUUCUGCCUUCUCUAUGUUGCUCUUCCCAAUCCCUGAUUCUACUCUCUUGAUUGUAUCCCUGGGCACUUGUAUUCUUGAGUGGAUUUGCAAUAUAUUGGUGGCACUGUGUGUGAGAGAUUUGGUGUGAUUGUGUUGGUUCGUGACAGAUCGGGGCGACGUGGGGGUGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGUGGAGGACGCCGGCGGCGAGGGCAUCAUGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGUUCCAGAUAUAAGCUGCAUGGCAAGAAGAGCAAAGUUGACAAUCAACCUCAAAUUAAGGAAAUCCACGAUAAAUGUGGAACAAUUAAUACAUGUAAGACUAAGGCAGAUACUAAACUUCAUGGGGGGAAAAACUGCAUAUAUCAAGAAGUUUGAUGGAACGGUGGGAGUGCCAAUAUUGAGAUCCAAAAGGGUUCCACCAUCAGAGGAGGAUUCAGAUGCGAUGGAGUCGUAAUACAUCAAGAGAAUCGUUUGUUGUCCUUGUGGCAGAAUUCGCAAGUCAAGGCUAACCAUAUAAUGCUUAUUUGUUCUGGUUUUUAAGAGCCUGUUCUUUAUGGUGCAAACUUCAAAAAAAAAAAAAAAAAAAAAAAACUUUGCCUCAAAAAGAACUUCAGAAAAUGCAUCUCCAACUUCAAUGGUCAAGCUAAGAAGCUAGGAGCUAGAGGUUGGAGCCGUGCCAAAGAGUCCUAACUUUCGUUGGGCCUGGCUUAUGAUACAAGAUUAACAUGAUUUUAUCUGGUUCAUUUAUUUGAUGUAUUUUUUGGUGUGGUUCUUGUUGGAAAAAGAGAUGAACCGCAGAGUGCCUUGUUCUCUCGCAGUACUUUGUGGUAGCUGAGAACAGUACUGAGUACGACUGCUGAUUACUUAAUUGGAUGCUGACAGCACUUGGUUAUUCUCUUGGUUUGCACUAAUAUGAAUGUUUUUCUUUGGACGUUUUUGGGCAGAUGAUGGACAUUGGUGGUGAAGGAGAUCCGUAGGUGCAAGAUGAGGACCAUAUGAAUUUGGUGAGACAGUUUUAGCUUUAUCAUCUUAGCAUCAGUCAAGUCUACAGAGUGGAGUUGAGGUGGUGAUUGAUGUUUGACCAUCAAGCAGGUGGUGCUUUUCGCAACUUCACCUGACCUUUUUUUUUUGUCCAAUUGCUGAGUGAAAACAUAUGUGAUGUCUCAAGUCUCUCUACCAAUGCCAGCUUUCAAUCCAGAACUUGAACAUGAAUUGCAAAACUGUAAAUGAAUUUGCUAGGAAUUUACCAUUUCAAGAAAUCUUGGAGUA
Sequence
(XR_001540290.2):
GCCACACACGCUGGAAGGGGAUCGAUGAACAGAAAUAUAAUCUGGCUUUGCCAUGGCUCUCUUCCUCCUCCAACUCUGCCUCCCCUAAUUUCUAUUUCUCUAAUCCUAGUCUCAUGCUUCUGCCUUCUCUAUGUUGCUCUUCCCAAUCCCUGAUUCUACUCUCUUGAUUGUAUCCCUGGGCACUUGUAUUCUUGAGUGGAUUUGCAAUAUAUUGGUGGCACUGUGUGUGAGAGAUUUGGUGUGAUUGUGUUGGUUCGUGACAGAUCGGGGCGACGUGGGGGUGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGUGGAGGACGCCGGCGGCGAGGGCAUCAUGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGUUCCAGAUAUAAGCUGCAUGGCAAGAAGAGCAAAGUUGACAAUCAACCUCAAAUUAAGGAAAUCCACGAUAAAUGUGGAACAAUUAAUACAUGUAAGACUAAGGCAGAUACUAAACUUCAUGGGGGGAAAAACUGCAUAUAUCAAGUUUGAUGGAACGGUGGGAGUGCCAAUAUUGAGAUCCAAAAGGGUUCCACCAUCAGAGGAGGAUUCAGAUGCGAUGGAGUCGUAAUACAUCAAGAGAAUCGUUUGUUGUCCUUGUGGCAGAAUUCGCAAGUCAAGGCUAACCAUAUAAUGCUUAUUUGUUCUGGUUUUUAAGAGCCUGUUCUUUAUGGUGCAAACUUCAAAAAAAAAAAAAAAAAAAAAAAACUUUGCCUCAAAAAGAACUUCAGAAAAUGCAUCUCCAACUUCAAUGGUCAAGCUAAGAAGCUAGGAGCUAGAGGUUGGAGCCGUGCCAAAGAGUCCUAACUUUCGUUGGGCCUGGCUUAUGAUACAAGAUUAACAUGAUUUUAUCUGGUUCAUUUAUUUGAUGUAUUUUUUGGUGUGGUUCUUGUUGGAAAAAGAGAUGAACCGCAGAGUGCCUUGUUCUCUCGCAGUACUUUGUGGUAGCUGAGAACAGUACUGAGUACGACUGCUGAUUACUUAAUUGGAUGCUGACAGCACUUGGUUAUUCUCUUGGUUUGCACUAAUAUGAAUGUUUUUCUUUGGACGUUUUUGGGCAGAUGAUGGACAUUGGUGGUGAAGGAGAUCCGUAGGUGCAAGAUGAGGACCAUAUGAAUUUGGUGAGACAGUUUUAGCUUUAUCAUCUUAGCAUCAGUCAAGUCUACAGAGUGGAGUUGAGGUGGUGAUUGAUGUUUGACCAUCAAGCAGGUGGUGCUUUUCGCAACUUCACCUGACCUUUUUUUUUUGUCCAAUUGCUGAGUGAAAACAUAUGUGAUGUCUCAAGUCUCUCUACCAAUGCCAGCUUUCAAUCCAGAACUUGAACAUGAAUUGCAAAACUGUAAAUGAAUUUGCUAGGAAUUUACCAUUUCAAGAAAUCUUGGAGUA
Sequence
(XR_003239085.1):
CAGCCACACACGCUGGAAGGGGAUCGAUGAACAGAAAUAUAAUCUGGCUUUGCCAUGGCUCUCUUCCUCCUCCAACUCUGCCUCCCCUAAUUUCUAUUUCUCUAAUCCUAGUCUCAUGCUUCUGCCUUCUCUAUGUUGCUCUUCCCAAUCCCUGAUUCUACUCUCUUGAUUGUAUCCCUGGGCACUUGUAUUCUUGAGUGGAUUUGCAAUAUAUUGGUGGCACUGUGUGUGAGAGAUUUGGUGUGAUUGUGUUGGUUCGUGACAGAUCGGGGCGACGUGGGGGUGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGUGGAGGACGCCGGCGGCGAGGGCAUCAUGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGUUCCAGAUAUAAGCUGCAUGGCAAGAAGAGCAAAGUUGACAAUCAACCUCAAAUUAAGGAAAUCCACGAUAAAUGUGGAACAAUUAAUACAUGUAAGACUAAGGCAGAUACUAAACUUCAUGGGGGGAAAAACUGCAUAUAUCAAGAAGUUUGAUGGAACGGUGGGAGUGCCAAUAUUGAGAUCCAAAAGGGUUCCACCAUCAGAGGUAUGCUUUGAUUAUUGAUUGAAUUAUAUUGUGGAAAACCAAUGUUAGAAACUUAAAAGGCUCCAUGACAUAAUAUUUAUUUUGAUUGGCUGAUAGGACUAAAUGGCCAAGACAAUAUUUUUGAAUUUCAAAACUUUUACAUCCUUGAUCCUGGAUGUAUCGAAUACACCAUGCGAAGGUAGAUGGUCAAAGUUGUGCCUAACUGCCUAUGACCCCUCGCUGGUAACCUCAAUGCACUUUCAGUAAUUUUACUGUACAAAAUGAAGUGAAUAUCUUUUGCUUAACUUAUAGCAUACUCCCUCUGUCAAAAAAAAAAAAUCAACCUGACAAUGUAUCUGGACAUAGGGUAUGUUCAGAUACAUUGUCCUAUAAGAGGUUACAUCCCUUUAUAGGUUGAUUAUUUUUUUGGGACGGAGGGAGUAUAUGGUAUCUCUAAGAGUAGCUAGUUUAUCAUUGACGUUUAUGCCUUACGUACCAGUGCUUUUUUACUGCCUCUUACAGAGAGCAGUGCGCAUCAACUGUAUUUGUCCCUUUUUGCUGACCUUUGGCACUCUUUGGUGUUCUACUUGAGGGAUGCAGUUAGCAUGAUACUCCUGAUAUAAGGAGGAUUCAGAUGCGAUGGAGUCGUAAUACAUCAAGAGAAUCGUUUGUUGUCCUUGUGGCAGAAUUCGCAAGUCAAGGCUAACCAUAUAAUGCUUAUUUGUUCUGGUUUUUAAGAGCCUGUUCUUUAUGGUGCAAACUUCAAAAAAAAAAAAAAAAAAAAAAAACUUUGCCUCAAAAAGAACUUCAGAAAAUGCAUCUCCAACUUCAAUGGUCAAGCUAAGAAGCUAGGAGCUAGAGGUUGGAGCCGUGCCAAAGAGUCCUAACUUUCGUUGGGCCUGGCUUAUGAUACAAGAUUAACAUGAUUUUAUCUGGUUCAUUUAUUUGAUGUAUUUUUUGGUGUGGUUCUUGUUGGAAAAAGAGAUGAACCGCAGAGUGCCUUGUUCUCUCGCAGUACUUUGUGGUAGCUGAGAACAGUACUGAGUACGACUGCUGAUUACUUAAUUGGAUGCUGACAGCACUUGGUUAUUCUCUUGGUUUGCACUAAUAUGAAUGUUUUUCUUUGGACGUUUUUGGGCAGAUGAUGGACAUUGGUGGUGAAGGAGAUCCGUAGGUGCAAGAUGAGGACCAUAUGAAUUUGGUGAGACAGUUUUAGCUUUAUCAUCUUAGCAUCAGUCAAGUCUACAGAGUGGAGUUGAGGUGGUGAUUGAUGUUUGACCAUCAAGCAGGUGGUGCUUUUCGCAACUUCACCUGACCUUUUUUUUUUGUCCAAUUGCUGAGUGAAAACAUAUGUGAUGUCUCAAGUCUCUCUACCAAUGCCAGCUUUCAAUCCAGAACUUGAACAUGAAUUGCAAAACUGUAAAUGAAUUUGCUAGGAAUUUACCAUUUCAAGAAAUCUUGGAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.05%
ME_num:
MEP:
29.88%
HE_num:
HEP:
66.87%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.51
Avg Expression:
15.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.63646412704455 | 1.28300581338121e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.54776037551728 | 6.62388503412958e-18 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.57400778674924 | 2.51425051244166e-18 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.47730691924132 | 2.18014887287526e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.28724824857759 | 1.90318902539577e-11 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.09831916683416 | 0.00248106128984581 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.19917844733085 | 0.0347315730853005 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.12897980068389 | 8.60904776471809e-09 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.4145390555858 | 1.49411514784828e-14 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.37561255433291 | 1.0764698915281e-06 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.37570522540623 | 1.07716071630169e-06 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.37577542064014 | 1.08606779453669e-06 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.61800851065983 | 8.80930187570615e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.29277670603166 | 4.54080352938069e-10 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.29913665166176 | 1.76765955014885e-05 |