Chr:
Chr10
Start:
11784175
End:
11788370
Strand:
-
Ref_name:
LOC4348479
Sequence
(XR_001540358.2):
CCUCCCAAAAGACCGAAACGCUCCGCCCGUAAUUUCUGCCGCCGACGCGGCCUACCGACGCCAUCUCCUCCCCCUCUCCUCUCCUCUCUCUUAGCCCGUGACCCCUCCCCCGCCGCCGCCGUCUCCCUUCGUCUCCCUCUCCUGUGCAGCCCCGUCGCGCCAUCCACCAUGCGCGCCCGUGAUCUGCUCCGCUCUCCCCUCCGCUGGCCGUCGCACGACUCCGGGUGGCGGCGGGAGGAGGAGACCUUGGCAGCAGGCAGACGCCUCCCUCCGCAUCUCCGCUCCGCUCUCUCCCCCUUAGAAGUUAGACCACCUCCACCGCCGUCGCACGCCGCAUCGCCUCUCCGAUCUCUCCCUGGCGGUUACGAAUCGAUCCCAGCCAGAGGCGACCAGGUCGGAACUCGGAAGCAGUGGCAGAUGGUGCUGGGCCUGCAAUGGCAAGUGUUCUCUAAUAAGAUCAUGGUGAUAUGGACCAAAGUUGGGGAGAUCAACACUUUGUCCGUUUCUAUGGCCGCAAACGCCGGCAACAGAAUAUGUGCAAAGAACCGGAAUCAAGCUGCAGGGAUAAAGCUCCAUCCUUAAGUGUGAUUGAGCAGGUACACUACUGAGGUUCUGGGGGUAAAGGUUAUGUUAUGUUAUAUUUCUUUCAAAAUUAAGUUUUUUGUGCUUCAUUUGUUUGGCUAAUAUAUUUUAGCAAUUUACAUGGUGCAGAUUUCUAUCUUCAGUACAUUCUCAGAUUGUGAUUUCACUAUAUACAUAUUGCAGAUCUGCCAAAUUGUUUACCACAGAGAUUGCUUUUGUGUUUUCCUAGCAUGUUUGUAUUGUAGGAAAACACGAUGUUGCUAACCGUGAGAAUUCCGCUUAACUCAGUCCCCUGUUUUGGUUAAGAAAAUUUGUGACCAAGAUCUUUGGCCAAGGUCAGUUUGGAUCCAGUUAUGCCUCUCUUAUCUUGAUUCUUGAACAAUAGAAGACUUUUAGUGAUGCAUAGUUAAGAAUUUCCGACUUGCUUUUAUAACCUAACACAUGUAUAUAAGCUUUUUAGGAAUAGUAGGAUAGCUGAUGCAAGUAUACAGGAGACUUAAAAAUCACUGGUUGUCACUGAAUUUUAACUAAACCUCAUAGAUCCUAGGGAGAAAAGGGUUAAUUGCAUAGACAUAUGCAGCAUUGGCAGUUGGGUUGCAUCUUCUUUGGCGGUUGGGGUAAGCUGGCCCCCAUCCUCUCUGUUCCACCCCCUACAAGUACAAAGAUCAAAACGGACUUGGUGAUGGUGAUUGUAUUGACCACCAAGCAGGUUCAUGGUAUUAGCCAAUUAAUUAUUGAAAUUGGAAAAAAGAAUUCAUGUGUAGUAUCAUUGGGCAUUAGGAAAUUCCUCCACCAUUACAGUUGUUGCUCGGAUGCAGUACUCCUUCCUGUGAUCCUGUCUUCCCCGCCUCAUUGAUUUUCCCUUGCCAAUAAUAUUGGUGGAGAACAGUGGAAGGUGCAAAACUAAUGAGCAUGGGGAGAAGGUUUGACUAUAUCACCAACUGCAAGGAAGUGUGCUGGGAUGCAGCAUUCAGAUCCUUUUCUGCCCAUUGUCAAAUGGGAUGGCAAGCCAGUUGGUGAUGAAUGACAAAAAAUGCUUUUGCACUGUUUAACAUGCUUUGCGAAGGCAUGAGGACUGGUCCAGAUAGGGUUCUUGUUACUUAUGAUCAUACUUGAGCUAGACAAUGACUCCUGAAACUUUGGUAGGUCUUUUCUGUAUAAUUAUAUCCUUCCAUUUAGGUCAGAUUUGUCUCCGGUGAUUAAUAUAGUAUAAAAUAAUCAAAACGCUUCUCCUUGUAAUAUGAAGUUUGGUUUGUAUUAUUUGUAGGUAAUAAGUUUUGUUUGUAUUCCUAAGAUACAAAAGUUGUGAUUUUAUAUUUUGGAGGCUAUAUAAUUAGCAACAAUAUAAUAACUCUCUCCGUAGUUUUUUUCCUAAAUAUUAAAUUUAUCUUAUUAGAUACU
Sequence
(XR_001540359.2):
UCCCAAAAGACCGAAACGCUCCGCCCGUAAUUUCUGCCGCCGACGCGGCCUACCGACGCCAUCUCCUCCCCCUCUCCUCUCCUCUCUCUUAGCCCGUGACCCCUCCCCCGCCGCCGCCGUCUCCCUUCGUCUCCCUCUCCUGUGCAGCCCCGUCGCGCCAUCCACCAUGCGCGCCCGUGAUCUGCUCCGCUCUCCCCUCCGCUGGCCGUCGCACGACUCCGGGUGGCGGCGGGAGGAGGAGACCUUGGCAGCAGGCAGACGCCUCCCUCCGCAUCUCCGCUCCGCUCUCUCCCCCUUAGAAGUUAGACCACCUCCACCGCCGUCGCACGCCGCAUCGCCUCUCCGAUCUCUCCCUGGCGGUUACGAAUCGAUCCCAGCCAGAGGCGACCAGGUCGGAACUCGGAAGCAGUGGCAGAUGGUGCUGGGCCUGCAAUGGCAAGUGUUCUCUAAUAAGAUCAUGGUGAUAUGGACCAAAGUUGGGGAGAUCAACACUUUGUCCGUUUCUAUGGCCGCAAACGCCGGCAACAGAAUAUGUGCAAAGAACCGGAAUCAAGCUGCAGGGAUAAAGCUCCAUCCUUAAGUGUGAUUGAGCAGGUACACUACUGAGGUUCUGGGGGUAAAGGUUAUGUUAUGUUAUAUUUCUUUCAAAAUUAAGUUUUUUGUGCUUCAUUUGUUUGGCUAAUAUAUUUUAGCAAUUUACAUGGUGCAGAUUUCUAUCUUCAGUACAUUCUCAGAUUGUGAUUUCACUAUAUACAUAUUGCAGAUCUGCCAAAUUGUUUACCACAGAGAUUGCUUUUGUGUUUUCCUAGCAUGUUUGUAUUGUAGGAAAACACGAUGUUGCUAACCGUGAGAAUUCCGCUUAACUCAGUCCCCUGUUUUGGUUAAGAAAAUUUGUGACCAAGAUCUUUGGCCAAGAUCCUAGGGAGAAAAGGGUUAAUUGCAUAGACAUAUGCAGCAUUGGCAGUUGGGUUGCAUCUUCUUUGGCGGUUGGGGUAAGCUGGCCCCCAUCCUCUCUGUUCCACCCCCUACAAGUACAAAGAUCAAAACGGACUUGGUGAUGGUGAUUGUAUUGACCACCAAGCAGGUUCAUGGUAUUAGCCAAUUAAUUAUUGAAAUUGGAAAAAAGAAUUCAUGUGUAGUAUCAUUGGGCAUUAGGAAAUUCCUCCACCAUUACAGUUGUUGCUCGGAUGCAGUACUCCUUCCUGUGAUCCUGUCUUCCCCGCCUCAUUGAUUUUCCCUUGCCAAUAAUAUUGGUGGAGAACAGUGGAAGGUGCAAAACUAAUGAGCAUGGGGAGAAGGUUUGACUAUAUCACCAACUGCAAGGAAGUGUGCUGGGAUGCAGCAUUCAGAUCCUUUUCUGCCCAUUGUCAAAUGGGAUGGCAAGCCAGUUGGUGAUGAAUGACAAAAAAUGCUUUUGCACUGUUUAACAUGCUUUGCGAAGGCAUGAGGACUGGUCCAGAUAGGGUUCUUGUUACUUAUGAUCAUACUUGAGCUAGACAAUGACUCCUGAAACUUUGGUAGGUCUUUUCUGUAUAAUUAUAUCCUUCCAUUUAGGUCAGAUUUGUCUCCGGUGAUUAAUAUAGUAUAAAAUAAUCAAAACGCUUCUCCUUGUAAUAUGAAGUUUGGUUUGUAUUAUUUGUAGGUAAUAAGUUUUGUUUGUAUUCCUAAGAUACAAAAGUUGUGAUUUUAUAUUUUGGAGGCUAUAUAAUUAGCAACAAUAUAAUAACUCUCUCCGUAGUUUUUUUCCUAAAUAUUAAAUUUAUCUUAUUAGAUACU
Sequence
(XR_003239128.1):
CCUCCCAAAAGACCGAAACGCUCCGCCCGUAAUUUCUGCCGCCGACGCGGCCUACCGACGCCAUCUCCUCCCCCUCUCCUCUCCUCUCUCUUAGCCCGUGACCCCUCCCCCGCCGCCGCCGUCUCCCUUCGUCUCCCUCUCCUGUGCAGCCCCGUCGCGCCAUCCACCAUGCGCGCCCGUGAUCUGCUCCGCUCUCCCCUCCGCUGGCCGUCGCACGACUCCGGGUGGCGGCGGGAGGAGGAGACCUUGGCAGCAGGCAGACGCCUCCCUCCGCAUCUCCGCUCCGCUCUCUCCCCCUUAGAAGUUAGACCACCUCCACCGCCGUCGCACGCCGCAUCGCCUCUCCGAUCUCUCCCUGGCGGUUACGAAUCGAUCCCAGCCAGAGGCGACCAGGUCGGAACUCGGAAGCAGUGGCAGAUGGUGCUGGGCCUGCAAUGGCAAGUGUUCUCUAAUAAGAUCAUGGUGAUAUGGACCAAAGUUGGGGAGAUCAACACUUUGUCCGUUUCUAUGGCCGCAAACGCCGGCAACAGAAUAUGUGCAAAGAACCGGAAUCAAGCUGCAGGGAUAAAGCUCCAUCCUUAAGUGUGAUUGAGCAGAUUUCUAUCUUCAGUACAUUCUCAGAUUGUGAUUUCACUAUAUACAUAUUGCAGAUCUGCCAAAUUGUUUACCACAGAGAUUGCUUUUGUGUUUUCCUAGCAUGUUUGUAUUGUAGGAAAACACGAUGUUGCUAACCGUGAGAAUUCCGCUUAACUCAGUCCCCUGUUUUGGUUAAGAAAAUUUGUGACCAAGAUCUUUGGCCAAGGUCAGUUUGGAUCCAGUUAUGCCUCUCUUAUCUUGAUUCUUGAACAAUAGAAGACUUUUAGUGAUGCAUAGUUAAGAAUUUCCGACUUGCUUUUAUAACCUAACACAUGUAUAUAAGCUUUUUAGGAAUAGUAGGAUAGCUGAUGCAAGUAUACAGGAGACUUAAAAAUCACUGGUUGUCACUGAAUUUUAACUAAACCUCAUAGAUCCUAGGGAGAAAAGGGUUAAUUGCAUAGACAUAUGCAGCAUUGGCAGUUGGGUUGCAUCUUCUUUGGCGGUUGGGGUAAGCUGGCCCCCAUCCUCUCUGUUCCACCCCCUACAAGUACAAAGAUCAAAACGGACUUGGUGAUGGUGAUUGUAUUGACCACCAAGCAGGUUCAUGGUAUUAGCCAAUUAAUUAUUGAAAUUGGAAAAAAGAAUUCAUGUGUAGUAUCAUUGGGCAUUAGGAAAUUCCUCCACCAUUACAGUUGUUGCUCGGAUGCAGUACUCCUUCCUGUGAUCCUGUCUUCCCCGCCUCAUUGAUUUUCCCUUGCCAAUAAUAUUGGUGGAGAACAGUGGAAGGUGCAAAACUAAUGAGCAUGGGGAGAAGGUUUGACUAUAUCACCAACUGCAAGGAAGUGUGCUGGGAUGCAGCAUUCAGAUCCUUUUCUGCCCAUUGUCAAAUGGGAUGGCAAGCCAGUUGGUGAUGAAUGACAAAAAAUGCUUUUGCACUGUUUAACAUGCUUUGCGAAGGCAUGAGGACUGGUCCAGAUAGGGUUCUUGUUACUUAUGAUCAUACUUGAGCUAGACAAUGACUCCUGAAACUUUGGUAGGUCUUUUCUGUAUAAUUAUAUCCUUCCAUUUAGGUCAGAUUUGUCUCCGGUGAUUAAUAUAGUAUAAAAUAAUCAAAACGCUUCUCCUUGUAAUAUGAAGUUUGGUUUGUAUUAUUUGUAGGUAAUAAGUUUUGUUUGUAUUCCUAAGAUACAAAAGUUGUGAUUUUAUAUUUUGGAGGCUAUAUAAUUAGCAACAAUAUAAUAACUCUCUCCGUAGUUUUUUUCCUAAAUAUUAAAUUUAUCUUAUUAGAUACU
Sequence
(XR_003239129.1):
CUCCCUCCCAAAAGACCGAAACGCUCCGCCCGUAAUUUCUGCCGCCGACGCGGCCUACCGACGCCAUCUCCUCCCCCUCUCCUCUCCUCUCUCUUAGCCCGUGACCCCUCCCCCGCCGCCGCCGUCUCCCUUCGUCUCCCUCUCCUGUGCAGCCCCGUCGCGCCAUCCACCAUGCGCGCCCGUGAUCUGCUCCGCUCUCCCCUCCGCUGGCCGUCGCACGACUCCGGGUGGCGGCGGGAGGAGGAGACCUUGGCAGCAGGCAGACGCCUCCCUCCGCAUCUCCGCUCCGCUCUCUCCCCCUUAGAAGUUAGACCACCUCCACCGCCGUCGCACGCCGCAUCGCCUCUCCGAUCUCUCCCUGGCGGUUACGAAUCGAUCCCAGCCAGAGGCGACCAGGUCGGAACUCGGAAGCAGUGGCAGAUGGUGCUGGGCCUGCAAUGGCAAGUGUUCUCUAAUAAGAUCAUGGUGAUAUGGACCAAAGUUGGGGAGAUCAACACUUUGUCCGUUUCUAUGGCCGCAAACGCCGGCAACAGAAUAUGUGCAAAGAACCGGAAUCAAGCUGCAGGGAUAAAGCUCCAUCCUUAAGUGUGAUUGAGCAGGUACACUACUGAGGUUCUGGGGGUAAAGGUUAUGUUAUGUUAUAUUUCUUUCAAAAUUAAGUUUUUUGUGCUUCAUUUGUUUGGCUAAUAUAUUUUAGCAAUUUACAUGGUGCAGAUUUCUAUCUUCAGUACAUUCUCAGAUUGUGAUUUCACUAUAUACAUAUUGCAGAUCUGCCAAAUUGUUUACCACAGAGAUUGCUUUUGUGUUUUCCUAGCAUGUUUGUAUUGUAGGAAAACACGAUGUUGCUAACCGUGAGAAUUCCGCUUAACUCAGUCCCCUGUUUUGGUUAAGAAAAUUUGUGACCAAGAUCUUUGGCCAAGGUCAGUUUGGAUCCAGUUAUGCCUCUCUUAUCUUGAUUCUUGAACAAUAGAAGACUUUUAGUGAUGCAUAGUUAAGAAUUUCCGACUUGCUUUUAUAACCUAACACAUGUAUAUAAGCUUUUUAGGAAUAGUAGGAUAGCUGAUGCAAGUAUACAGGAGACUUAAAAAUCACUGGUUGUCACUGAAUUUUAACUAAACCUCAUAGAUCCUAGGGAGAAAAGGGUUAAUUGCAUAGACAUAUGCAGCAUUGGCAGUUGGGUUGCAUCUUCUUUGGCGGUUGGGGUAAGCUGGCCCCCAUCCUCUCUGUUCCACCCCCUACAAGUACAAAGAUCAAAACGGACUUGGUGAUGGUGAUUGUAUUGACCACCAAGCAGGUUCAUGGUAUUAGCCAAUUAAUUAUUGAAAUUGGAAAAAAGAAUUCAUGUGUAGUAUCAUUGGGCAUUAGGAAAUUCCUCCACCAUUACAGUUGUUGCUCGGAUGCAGUACUCCUUCCUGUGAUCCUGUCUUCCCCGCCUCAUUGUAAGUGGAUAAUUAAUGAGCAGGCUGUCAAUGUCAUAAAUAGGAUUUUCCCUUGCCAAUAAUAUUGGUGGAGAACAGUGGAAGGUGCAAAACUAAUGAGCAUGGGGAGAAGGUUUGACUAUAUCACCAACUGCAAGGAAGUGUGCUGGGAUGCAGCAUUCAGAUCCUUUUCUGCCCAUUGUCAAAUGGGAUGGCAAGCCAGUUGGUGAUGAAUGACAAAAAAUGCUUUUGCACUGUUUAACAUGCUUUGCGAAGGCAUGAGGACUGGUCCAGAUAGGGUUCUUGUUACUUAUGAUCAUACUUGAGCUAGACAAUGACUCCUGAAACUUUGGUAGGUCUUUUCUGUAUAAUUAUAUCCUUCCAUUUAGGUCAGAUUUGUCUCCGGUGAUUAAUAUAGUAUAAAAUAAUCAAAACGCUUCUCCUUGUAAUAUGAAGUUUGGUUUGUAUUAUUUGUAGGUAAUAAGUUUUGUUUGUAUUCCUAAGAUACAAAAGUUGUGAUUUUAUAUUUUGGAGGCUAUAUAAUUAGCAACAAUAUAAUAACUCUCUCCGUAGUUUUUUUCCUAAAUAUUAAAUUUAUCUUAUUAGAUACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.93%
ME_num:
MEP:
58.74%
HE_num:
HEP:
20.12%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.71
Avg Expression:
12.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.12715206735611 | 0.0109986124814117 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.20306281229212 | 0.00151501703517316 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.17542946670868 | 0.00124709604713915 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.20844237291215 | 0.000144856195559325 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.46133172360557 | 4.11348943802502e-06 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.04522207351412 | 8.21308206139075e-08 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | -1.16788916486635 | 0.0216373574645014 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.17105426989883 | 0.000425109218732168 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.7529102836954 | 0.0102917043896741 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.10387778553619 | 0.00287344055214023 |
| 11 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.10389547168933 | 0.00385006243693068 |