Chr:
Chr10
Start:
10930317
End:
10931785
Strand:
-
Ref_name:
LOC4348434
Sequence
(XR_001540826.2):
UCUCGCAGAAAUCACGCCGCUCGCUGCUCUCACGCGCUCUCCUCCUCCCAGACUCUCGUGCCGCCCAAAUCGAUCCCCCUCCCCUCGCCACUGCCACCUCCUCCUCCAUCCCGCAAGCGCCGCCCCACUCCCCGCCGCGGCACCCGUGAUGCUGCCUCGCCCCUAACUCUAAUCGUCGAAGCCGAAGACCAUCGAGCCAGCGACGAUCUCCUCCGCGGCCACCACCGACCGGCUCCGCCGCCCGCGUCGCGCCUCUCUCCACCACGCCCUAAUCCUCUCCUUCUCACGCGACGCCGCCGGUGCCCCUCCCUGCCGACGCUCCUCCUCCUCCCCCCCCCUCCAAAUCAACGCCGCCGACGAUCGGCGCCGCUGGAACACCAUCGCCGUCUCGCCGACUACCGAGCUGAAGACAGCCAGGCCAGCGCCAACUUCAUCGCCUCCACACAUGCCGAAGCUCAUCCAUACCCCUGCCGCCGCCGAUCUACGAAGGUCUCUUCGUUGGGGGGACUCGUCGCCACCUCGUCCGACAUCCCCUUAACAAUGAUCUGGGCCACCCAGGUCCGGCAUUGAUUUAGUGCUGGAGAAGUACGGCAAGCCACAUUCAUUCUACCUAUGAAUGAGGAAAUUUCAUCAGUGUCAGUGAUGAGUUAAAUCACUCGAAGUUUGAAGUUUGAAGUUUGAGGCUUCAGUAAGGAAAGGGGCAGCAUAUAUAAAAGAUGGGCAUUAUUACAGAGUGUUUGUGCUGCUACAAUAUUGUGAAAUACAGGGAGACUGAAAUCUUGGAGAUAAAUUACUGAAGAACCAAACUCUAUUUACAAUGUACAGUGCACCUGGGAGGAUGACCGCGAAUGGAGUGACCUCGAUAUCCAAGGGCGGGGCUGUAAUGAGGUGGUACACCCGUGGACCAUGACGGUAUGGUGUGUGCGGCGGAUGCGGGCAAGGAGGGAAUCGCGUAGCUGGCGAAG
Sequence
(XR_001540827.2):
CUCGCAGAAAUCACGCCGCUCGCUGCUCUCACGCGCUCUCCUCCUCCCAGACUCUCGUGCCGCCCAAAUCGAUCCCCCUCCCCUCGCCACUGCCACCUCCUCCUCCAUCCCGCAAGCGCCGCCCCACUCCCCGCCGCGGCACCCGUGAUGCUGCCUCGCCCCUAACUCUAAUCGUCGAAGCCGAAGACCAUCGAGCCAGCGACGAUCUCCUCCGCGGCCACCACCGACCGGCUCCGCCGCCCGCGUCGCGCCUCUCUCCACCACGCCCUAAUCCUCUCCUUCUCACGCGACGCCGCCGGUGCCCCUCCCUGCCGACGCUCCUCCUCCUCCCCCCCCCUCCAAAUCAACGCCGCCGACGAUCGGCGCCGCUGGAACACCAUCGCCGUCUCGCCGACUACCGAGCUGAAGACAGCCAGGCCAGCGCCAACUUCAUCGCCUCCACACAUGCCGAAGCUCAUCCAUACCCCUGCCGCCGCCGAUCUACGAAGGUCUCUUCGUUGGGGGGACUCGUCGCCACCUCGUCCGACAUCCCCUUAACAAUGAUCUGGGCCACCCAGGUCCGGCAUUGAUUUAGUGCUGGAGAAGUACGGCAAGCCACAUUCAUUCUACCUAUGAAUGAGGAAAUUUCAUCAGUGUCAGUGAUGAGUUAAAUCACUCGAAGUUUGAAGUUUGAAGUUUGAGGCUUCAGUAAGGAAAGGGGCAGCAUAUAUAAAAGAUGGGCAUUAUUACAGAGUGUUUGUGCUGCUACAAUAUUGUGAAAUACAGGGAGACUGAAAUCUUGGAGAUAAAUUACUGAAGAACCAAACUCUAUUUUGCACCUGGGAGGAUGACCGCGAAUGGAGUGACCUCGAUAUCCAAGGGCGGGGCUGUAAUGAGGUGGUACACCCGUGGACCAUGACGGUAUGGUGUGUGCGGCGGAUGCGGGCAAGGAGGGAAUCGCGUAGCUGGCGAAG
Sequence
(XR_001540828.2):
GUCUCGCAGAAAUCACGCCGCUCGCUGCUCUCACGCGCUCUCCUCCUCCCAGACUCUCGUGCCGCCCAAAUCGAUCCCCCUCCCCUCGCCACUGCCACCUCCUCCUCCAUCCCGCAAGCGCCGCCCCACUCCCCGCCGCGGCACCCGUGAUGCUGCCUCGCCCCUAACUCUAAUCGUCGAAGCCGAAGACCAUCGAGCCAGCGACGAUCUCCUCCGCGGCCACCACCGACCGGCUCCGCCGCCCGCGUCGCGCCUCUCUCCACCACGCCCUAAUCCUCUCCUUCUCACGCGACGCCGCCGGUGCCCCUCCCUGCCGACGCUCCUCCUCCUCCCCCCCCCUCCAAAUCAACGCCGCCGACGAUCGGCGCCGCUGGAACACCAUCGCCGUCUCGCCGACUACCGAGCUGAAGACAGCCAGGCCAGCGCCAACUUCAUCGCCUCCACACAUGCCGAAGCUCAUCCAUACCCCUGCCGCCGCCGAUCUACGAAGGUCUCUUCGUUGGGGGGACUCGUCGCCACCUCGUCCGACAUCCCCUUAACAAUGAUCUGGGCCACCCAGGUCCGGCAUUGAUUUAGUGCUGGAGAAGUACGGCAAGCCACAUUCAUUCUACCUAUGAAUGAGGAAAUUUCAUCAGCAUUGUUUUGUAUCCUUUGCAUCAAGUGUCAGUGAUGAGUUAAAUCACUCGAAGUUUGAAGUUUGAAGUUUGAGGCUUCAGUAAGGAAAGGGGCAGCAUAUAUAAAAGAUGGGCAUUAUUACAGAGUGUUUGUGCUGCUACAAUAUUGUGAAAUACAGGGAGACUGAAAUCUUGGAGAUAAAUUACUGAAGAACCAAACUCUAUUUACAAUGUACAGUGCACCUGGGAGGAUGACCGCGAAUGGAGUGACCUCGAUAUCCAAGGGCGGGGCUGUAAUGAGGUGGUACACCCGUGGACCAUGACGGUAUGGUGUGUGCGGCGGAUGCGGGCAAGGAGGGAAUCGCGUAGCUGGCGAAG
Sequence
(XR_003238972.1):
GUCUCGCAGAAAUCACGCCGCUCGCUGCUCUCACGCGCUCUCCUCCUCCCAGACUCUCGUGCCGCCCAAAUCGAUCCCCCUCCCCUCGCCACUGCCACCUCCUCCUCCAUCCCGCAAGCGCCGCCCCACUCCCCGCCGCGGCACCCGUGAUGCUGCCUCGCCCCUAACUCUAAUCGUCGAAGCCGAAGACCAUCGAGCCAGCGACGAUCUCCUCCGCGGCCACCACCGACCGGCUCCGCCGCCCGCGUCGCGCCUCUCUCCACCACGCCCUAAUCCUCUCCUUCUCACGCGACGCCGCCGGUGCCCCUCCCUGCCGACGCUCCUCCUCCUCCCCCCCCCUCCAAAUCAACGCCGCCGACGAUCGGCGCCGCUGGAACACCAUCGCCGUCUCGCCGACUACCGAGCUGAAGACAGCCAGGCCAGCGCCAACUUCAUCGCCUCCACACAUGCCGAAGCUCAUCCAUACCCCUGCCGCCGCCGAUCUACGAAGGUCUCUUCGUUGGGGGGACUCGUCGCCACCUCGUCCGACAUCCCCUUAACAAUGAUCUGGGCCACCCAGGUCCGGCAUUGAUUUAGUGCUGGAGAAGUACGGCAAGCCACAUUCAUUCUACCUAUGAAUGAGGAAAUUUCAUCAGUGAUGAGUUAAAUCACUCGAAGUUUGAAGUUUGAAGUUUGAGGCUUCAGUAAGGAAAGGGGCAGCAUAUAUAAAAGAUGGGCAUUAUUACAGAGUGUUUGUGCUGCUACAAUAUUGUGAAAUACAGGGAGACUGAAAUCUUGGAGAUAAAUUACUGAAGAACCAAACUCUAUUUACAAUGUACAGUGCACCUGGGAGGAUGACCGCGAAUGGAGUGACCUCGAUAUCCAAGGGCGGGGCUGUAAUGAGGUGGUACACCCGUGGACCAUGACGGUAUGGUGUGUGCGGCGGAUGCGGGCAAGGAGGGAAUCGCGUAGCUGGCGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
15.85%
HE_num:
HEP:
50.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.65
Avg Expression:
14.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.25467301754982 | 2.57887619011899e-08 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.13653716392873 | 0.000179077783429059 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.11103966763041 | 0.000602539325276466 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.99839480970623 | 0.00815880660973961 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.02011785641148 | 8.0847630307856e-06 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.6487003004917 | 0.000130346465831138 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.64879995359855 | 0.0001357308611072 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.64890297819051 | 0.000131251359835378 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.10092766009348 | 0.0027235888588832 |