Chr:
Chr10
Start:
10543454
End:
10544807
Strand:
+
Ref_name:
LOC4348380
Sequence
(XR_001540420.2):
AAUUUUCUAAGCUAAGCAAAGGUAAUUUCCUAUCUAUAGCUCUAUGAUGCAUCCAAACGUGGAGGAUUACUGGGACGGAAUUCAGGGCUGUCACCACCUGCCGCCUACCUCGGACAAAUCCAUGGGAUACACAAAACAAAGGUAUGGGAAACGACCAAACUACCCUCCAACCAUCAUUAGGAAGAGAUCAGGGCCAUCCACAUCGAAUCUCACGAUCAACGGCCACAAAAAGUGUUCGGGCCGAACUCGAGACGGCUCCGUUCGGCCCAUUUUUUAUCGUGGACACUAAUUUUGAGACCCUCAGCCUAUUGGCAUGAUAGUUGGGCCCAUUUGGAGUUGUUUACUUGACUUAUGGGGCCUCCAAUCCGUGUAAAUGUAUCCUGAAUGCGCGGAGGUGCAGUUUGUUGCUUGACGGAUGUGUUUUCUUCUCAAAAUACCUGCAUACACAUAUUUCACCAACACUAGUGGAAAUGAUUAGUAAUAAUACCUACCACUAAGUUGGAUACCAUGUUUUAUUUCAUUAUAUGUAGGUAAUGACGGUCAGAUAUUAUGAUUUAAGAACCGUCAACAGACUUCUAGAUGUUUCGUGCCUAGCCCCAAAGCUCGCCUGUGGAAUAAGUUAGUUGCCUAGGUUCUUUGCCUAGUGCAUAGUCGCUUAGUCGCUUAGUUCUCCGCGCUAUUCGCUAGUCGCUUAGUUCUCCGCGCUGUUCGCUUCUGCGUCGUCGCUUUUAUGGUUUUCUGUAAUGUUGUGUUGCUCAUCUAUGGACCUGUCCAUGGUGGCAACUUAUGUAAGGACUACUACCCAGUGAUGUAAUAAAACAGUUUUCUUUGAUUCCACAGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.35%
ME_num:
MEP:
33.74%
HE_num:
HEP:
6.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.77
Avg Expression:
4.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.72610887101952 | 0.00144012798891096 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.54507715959961 | 3.61920202232817e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.73396258699481 | 1.21132406534335e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.01869510468919 | 7.66550980310872e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.44004755446898 | 0.0112379551969942 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.02195074247784 | 0.00735915589792373 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.67027316897373 | 2.86123727502565e-08 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.77920688912165 | 4.75527272989065e-07 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.2776685829808 | 0.00015395549247991 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.77599022272504 | 0.00883728340630629 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.12228154222366 | 1.1508473084044e-13 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -5.59639547867831 | 0.0412843218757875 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.1680498653636 | 3.1818510180575e-07 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.84659798171978 | 1.25462207657798e-07 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.9961605708561 | 3.55071149645865e-30 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.02054974859478 | 3.34393709062777e-12 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.18019643749404 | 0.0283285742010415 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.11915559159081 | 3.94757951154463e-10 |