Chr:
Chr10
Start:
8463005
End:
8464985
Strand:
+
Ref_name:
LOC4348295
Sequence
(XR_001540314.2):
UUACAGGAUCACAAAUCAUUGUUGCCCCGGUGGACGAAGACGCAGCUGCCUCUUUCAAUGAAUUGUUGGUCUUUUUUUAUGCUAAGGUAGUACUUGGUGAGUCCGUGAGCUGAUGAUGCCUUGGUAUGGAUGCUUGACUGAUUAACGAUGGAAAUGUCAGGGCGCAGUGAAAGAAUGUGGAAACAGCCGUCAUGCCCCUCUAAUUUCUCAUCUACUGUGUACAAUAGUGGAUUCCCUGAUCCAGGAUUAGCACCAUAUCCAAUGAUGAGUAAUUUCUAAAAAGGGUUCAUUGCACAGCCCAAAAUAGUGCUCUGCAUCUGUUUUCUGCAUGGAUGGCUUCAGUAGCCAUACCAACAUAUUGGCUUCAGGUGUAGCCGUGCAGCAAUGCCACAUCUUCCUUCAAAGGUGGAGACAAUGCUAUAUUAUAGCUUGUGACGGUUGGUUUGGUGUAGUAGAUGGAGUUGAUCAAUAGUUAUUUGAAGGACCAAAGUUGAUGGCAUAAUUGAUCUCCCUCUCCUCUGUCCUGCUACUGACAUUAGAAGUGCAAGCUUUUCUUGUAAUUGUUUUUUAGUGUACUUUUCUUGUUUGUGAUAAUCAAUUUUUUACUCCGAUUGAGUUGACCUUAGGAGUGCAAUGUAUAAAUUGUGCUUGAUCCAUAAAAUAUUUUUGCUUUUAUUCUGUUUUUAUAGAGAACCAUCCAAAUUGUCAGGUUAGUAUAGUUUAUAUGAAAUUGUCUUAAUUACUAAAAGAAUUUAUAUGGAGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.39%
ME_num:
MEP:
18.29%
HE_num:
HEP:
57.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.73
Avg Expression:
33.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.06683494801047 | 0.0428402402349028 |
| 2 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.29187121458574 | 0.00752624901035659 |