Chr:
Chr10
Start:
5841195
End:
5843462
Strand:
+
Ref_name:
LOC4348219
Sequence
(XR_001540220.2):
UCUCAGUCUCCCGCUUUUUCUCCUCUCCUCUCUCUCUCUCUCACACUGACGACGGCGAGGGCGGGAGCGGCGCGGUGCGCUCGGGUGGGGCCGGUCGACGUCUGCAGCGGCCACAGCGGUGGGCGGGAGCGGCGCGGCAACGGCGGGCUCGACGGCCGGCGCCCUCCUCCUCCCAGAUCCAGCGGCGGCGCGCUUGGGAGGGGCCGGGAGCGGCCACGGCGGGCGGCGGGAGCGGCGCGGCAGUCCGCUCAAUCCCUCAUCUUCUUCUGUCCUCACGGCCUCCACUUUCUGCUUCGCCUCAUCCAGUCCGCUUCCUCCCCACAUGCCGUUUCCUCUUUCCCAUGGACUGCGUCGGAGAAAUUGCCGAACGUGAAGAGUUUGGGUAGCUCAAUGGGUGGGGAGCAUCGCAGCAGCGGCGGGAGCCCCCGAUCCGUCGAGAUCCAGCGCGGGGAGAGGGUGUGGGACGCGAGUACACCGACGACGAUGGACGCCGUCGAGGAGCUCACGCAGCUGUCGGAGUCGAUGCGCCAGGUGGCGUCGCUGCUGGCCGACGACGACCCCUGUGACGACUCCGCCCCACGCCGCCUCUCCACCUUCGUCAACGCCGUCGCGCUCGGCAACGUUGGGCGGGCAAGAUGGCCGUGCUGAACAGCCUCAUCGGCCACCCCAUGCUGGUGAGCUCGUACUAAUGGCCACCACCUUGCCCUUCUCCGCUUACAGCCGCGCACCCACCCACUGUAGCACACGGGGUGUGGGGAGCAGGUGAUAGGUGAGGCGAGCAACCUCCUCCAUGGCGCCGCCCCAGUGCCGAUGAGCAGCGUCGUCCCUGCUGUUUGAGUGCUGAUGAGAUGGAUGUGGCUGGAUGUUGUUGGUGUGCGGUUGCUCCUAUGCGGGAAGAGCUGCCAGCUGCAGUGGAUGAAAAAUAUCCAUGCAAUUUUCGGCUUGCUAAAUGGUGAAACAAUUAGAGGACCAGAAAGAGGCAGCAAGGAAGAAUGAAGAAGAAACUGAGAAGCUGAGGCAGCAAGGAAGUGAAAUCCAAAGCUUCGUUCGCUCCUUGAUUGGCAGCAAGUUUGCAUCAUUAGAUGCUCAGCAAUGUGCUGCUGUUGCUCUCGAUGUAGGAGGAAGAUGAAAUUUGAGACUUUGGAUAUGUAUUGAAUUAGUGGAUGGAUGUACUGAUAUUGCAUUUUCAGACUUGUGGAGUGUGAAAUGCAUAUGACAUUGCAAUCAUUUGUGGAAUGUUAAUUCAUUUGAAUCUGAUUUUGUAUGUGCAGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.51%
ME_num:
MEP:
0.61%
HE_num:
HEP:
79.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.70
Avg Expression:
85.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.28357059427241 | 0.000513872595171443 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.64262556324907 | 5.78008199464025e-17 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.01024533976489 | 1.84321389628371e-08 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.33117161803916 | 7.77887181932274e-07 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.33126427253024 | 8.40055202578127e-07 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.33135424419693 | 7.87070602677173e-07 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.10171098355967 | 0.000347149348554482 |