Chr:
Chr10
Start:
4744223
End:
4747684
Strand:
+
Ref_name:
LOC4348181
Sequence
(XR_001540398.2):
UAUAAAAAUGAGGAGUUGCCCCCUCCAAUCUUACAGGUGAAAUCAUCUCGAUCAAUCCUUACCGUCCAUCUGCGUCUGUCCUGAUCCAUAUCCUCCAUCCAUCCGCCACGGAUUGUCCGCUUCCUCCUUCUCGCGCGAUGAACUUGCGCUGACCAUGCUGGACUCGCGCUCCUCCUCGCCCCGAUUCUCCUCGCCCCGCCUCAGUCCAACGGUGCUCCAGCCGAUGCUCCUCCUCCUCCACCCUAUUCCUCCUCGCAUUCCCCGUUCGCGCCGCCGGAGGGUCGUCCCCUUCCGCCGACGCCGCCAUACUCCACCGAUGCCCUCGCUGGAACCGAUUUCUUCCCCUUCCGCCGGCACCGCAAUCCACAUCACAGGUUCACAGGUCCUCGCCGGAACCGAUUUCUUCCCCUUCCGCCGUGCCACCGUCGCCGCAAUCCACUUCACAGGUUCAUCUUGCGCCGAUUGGUUCCCGUCAGAUUUGAGUAGGAACUAAAGGAACCAUCACUAUUCCCCUGAACCCUAAGUUGAUCCUGUGCAGCCCCUGUCAAUGGAUUUGUAUCCUUUCUUUCUUCUGAACUUUUCAGAUCACUGGAGGCUCUAAAUUUUGCUUGUAAUACAGAUGAUUAGCACUACUCACUGUGAAGCCAUCCUACUGUUCUUGUUCGUAGUUACUGAAAAAUAUAUAAAGCCAUCCUACUGUUCUAUAGGAGAAUCUAAACCCAGUGGCAACAUCACAUGCAAAACACCUCCAUAUGAAAUUAAUCCUUCUUUUUCUUCCUAUUUCCUUGCAGAUCUUCAAAUUUGUGGUUCCCCGAGUAUAUAUAUGCCCAGGUUGUAUGCUUGAAGGUUGUAACUCCUAGCGAUGGACGGCAUUCCUAAAUUAACUGCAAAUGAAUUAAGAAGACAAAGAGACCGAGAGCGGUACGCGGCACUCAGCGUUGAGGAGAAGGCAGCACGAGUUCAAAAGAACCGUGAAAAUAGGAAGAGGAAGAAGUCUGCAUCUACAUCGGGCACAGGUGUGCUUGGCGAUAUUAAAAAUUUGAGUUUGCAUAAUGGAAGCCAAACUGUAGAUUGUCAGCCAUCAUUUCAACCUGUGCCUUCCUCCACACCCGUGUCUUCCUGCACACCUGUUUGCAGAAACCGACAAACCUAAGGAAGUACUUUUUGCGGCACACUUGCCGUAUACUGCUGCAUGCAGCUCAGGCAAUGUCACAGUUAUCAUGCAGGCUCCCAAUGAAGUGCUUUCCAAGUACCACUGAAAUGGUGAAAUUGGUGUAGUUAUCAUGCAUGCUCCCAAUGAGGAAAUAUAGGACAAAUAAACAGAUGACUGUUUUAGACAAGUUCACCCUAUUGAUAGCAUUAAAAUUAGAUGCUCAAGAUGGAUGAUAGUAACAACAAAAGCAAGUGGUUAAGUCCUCCAAUGUUUCAUCAUUUACGGAGGAGUUCAUAAGGCUUGCCCCAGUCUCUCUCGCGGCAAUGGUCUGCGUGUGCUACAAUCUGCAUCCCUCCACGCCUGAGUAAUCCCCUCCGUUCCCAUGUUGACCGACGCGGCCGCCGCUGUCUCCUCCAAAGCAGCAGCGGUCCUAGCCGAAUUGGCCAUCCCCAUUGCCAAACACCAUCACUGGCGCCGGCAGCCUCAAUCCGCGUCGAGUUUUUGUCUCCACCAGCAUAGUGGUCUCUACACAUGAGGCCUCGAGUGACAAAUCAGAGCAGCAAUCAUGCUUUGUUGUGGCUUUUAUCUCUGCCGAUCUCACGGCAAUCUAUCGACAUGCACAUUUGUAUUUUGUAGUUGGAUAAAAAAAAAGUAGCAAUAGUUGCCAUCUUUUUCUCUAGGAAAAACUGAUUUGUUUAUAUGCUUUCUCAGUUUAUGUCAGAGAAAAUGGUUAGUUGAGCUUGUCUCCUAUACUGAAUGUGCUUGGGGUUAACUGGGCUUUCAGUCAGUAAGCAUGGUAACAGACUCUUCAUUGAGUUAAGUAGUCCAAUAAUUAUUUUUUAAAGCAUUUUAGUCAGAGUAGAAACAAUUAUAUUUUUUCUCUACUGACUGCAUCUGGUAUUUUUGGUAAUUAGCUGGCAUCACGUACUUAUGUAUAUAGUCAUAUGGACAUCAAGCAUGUUUGUGGGAUAAUAUAAGAUGCUCUAGGCAGAGUAGAAACAUUUAUAUUUUACAUUCCUUUGUGUCAUAUUUUCCCUUUUUUAGGGAAGGGGGCAGAUCACUGCUCAAUAAUAAAUUUAUUCAUAGUUUA
Sequence
(XR_001540399.2):
CCCUCCAAUCUUACAGGUGAAAUCAUCUCGAUCAAUCCUUACCGUCCAUCUGCGUCUGUCCUGAUCCAUAUCCUCCAUCCAUCCGCCACGGAUUGUCCGCUUCCUCCUUCUCGCGCGAUGAACUUGCGCUGACCAUGCUGGACUCGCGCUCCUCCUCGCCCCGAUUCUCCUCGCCCCGCCUCAGUCCAACGGUGCUCCAGCCGAUGCUCCUCCUCCUCCACCCUAUUCCUCCUCGCAUUCCCCGUUCGCGCCGCCGGAGGGUCGUCCCCUUCCGCCGACGCCGCCAUACUCCACCGAUGCCCUCGCUGGAACCGAUUUCUUCCCCUUCCGCCGGCACCGCAAUCCACAUCACAGGUUCACAGGUCCUCGCCGGAACCGAUUUCUUCCCCUUCCGCCGUGCCACCGUCGCCGCAAUCCACUUCACAGGUUCAUCUUGCGCCGAUUGGUUCCCGUCAGAUUUGAGUAGGAACUAAAGGAACCAUCACUAUUCCCCUGAACCCUAAGAUCUUCAAAUUUGUGGUUCCCCGAGUAUAUAUAUGCCCAGGUUGUAUGCUUGAAGGUUGUAACUCCUAGCGAUGGACGGCAUUCCUAAAUUAACUGCAAAUGAAUUAAGAAGACAAAGAGACCGAGAGCGGUACGCGGCACUCAGCGUUGAGGAGAAGGCAGCACGAGUUCAAAAGAACCGUGAAAAUAGGAAGAGGAAGAAGUCUGCAUCUACAUCGGGCACAGGUGUGCUUGGCGAUAUUAAAAAUUUGAGUUUGCAUAAUGGAAGCCAAACUGUAGAUUGUCAGCCAUCAUUUCAACCUGUGCCUUCCUCCACACCCGUGUCUUCCUGCACACCUGUUUGCAGAAACCGACAAACCUAAGGAAGUACUUUUUGCGGCACACUUGCCGUAUACUGCUGCAUGCAGCUCAGGCAAUGUCACAGUUAUCAUGCAGGCUCCCAAUGAAGUGCUUUCCAAGUACCACUGAAAUGGUGAAAUUGGUGUAGUUAUCAUGCAUGCUCCCAAUGAGGAAAUAUAGGACAAAUAAACAGAUGACUGUUUUAGACAAGUUCACCCUAUUGAUAGCAUUAAAAUUAGAUGCUCAAGAUGGAUGAUAGUAACAACAAAAGCAAGUGGUUAAGUCCUCCAAUGUUUCAUCAUUUACGGAGGAGUUCAUAAGGCUUGCCCCAGUCUCUCUCGCGGCAAUGGUCUGCGUGUGCUACAAUCUGCAUCCCUCCACGCCUGAGUAAUCCCCUCCGUUCCCAUGUUGACCGACGCGGCCGCCGCUGUCUCCUCCAAAGCAGCAGCGGUCCUAGCCGAAUUGGCCAUCCCCAUUGCCAAACACCAUCACUGGCGCCGGCAGCCUCAAUCCGCGUCGAGUUUUUGUCUCCACCAGCAUAGUGGUCUCUACACAUGAGGCCUCGAGUGACAAAUCAGAGCAGCAAUCAUGCUUUGUUGUGGCUUUUAUCUCUGCCGAUCUCACGGCAAUCUAUCGACAUGCACAUUUGUAUUUUGUAGUUGGAUAAAAAAAAAGUAGCAAUAGUUGCCAUCUUUUUCUCUAGGAAAAACUGAUUUGUUUAUAUGCUUUCUCAGUUUAUGUCAGAGAAAAUGGUUAGUUGAGCUUGUCUCCUAUACUGAAUGUGCUUGGGGUUAACUGGGCUUUCAGUCAGUAAGCAUGGUAACAGACUCUUCAUUGAGUUAAGUAGUCCAAUAAUUAUUUUUUAAAGCAUUUUAGUCAGAGUAGAAACAAUUAUAUUUUUUCUCUACUGACUGCAUCUGGUAUUUUUGGUAAUUAGCUGGCAUCACGUACUUAUGUAUAUAGUCAUAUGGACAUCAAGCAUGUUUGUGGGAUAAUAUAAGAUGCUCUAGGCAGAGUAGAAACAUUUAUAUUUUACAUUCCUUUGUGUCAUAUUUUCCCUUUUUUAGGGAAGGGGGCAGAUCACUGCUCAAUAAUAAAUUUAUUCAUAGUUUA
Sequence
(XR_001540400.2):
AAAAUGAGGAGUUGCCCCCUCCAAUCUUACAGGUGAAAUCAUCUCGAUCAAUCCUUACCGUCCAUCUGCGUCUGUCCUGAUCCAUAUCCUCCAUCCAUCCGCCACGGAUUGUCCGCUUCCUCCUUCUCGCGCGAUGAACUUGCGCUGACCAUGCUGGACUCGCGCUCCUCCUCGCCCCGAUUCUCCUCGCCCCGCCUCAGUCCAACGGUGCUCCAGCCGAUGCUCCUCCUCCUCCACCCUAUUCCUCCUCGCAUUCCCCGUUCGCGCCGCCGGAGGGUCGUCCCCUUCCGCCGACGCCGCCAUACUCCACCGAUGCCCUCGCUGGAACCGAUUUCUUCCCCUUCCGCCGGCACCGCAAUCCACAUCACAGGUUCACAGGUCCUCGCCGGAACCGAUUUCUUCCCCUUCCGCCGUGCCACCGUCGCCGCAAUCCACUUCACAGGUUCAUCUUGCGCCGAUUGGUUCCCGUCAGAUUUGAGUAGGAACUAAAGGAACCAUCACUAUUCCCCUGAACCCUAAGUUGAUCCUGUGCAGCCCCUGUCAAUGGAUUUGUAUCCUUUCUUUCUUCUGAACUUUUCAGAUCACUGGAGGCUCUAAAUUUUGCUUGUAAUACAGAUGAUUAGCACUACUCACUGUGAAGCCAUCCUACUGUUCUUGUUCGUAGUUACUGAAAAAUAUAUAAAGCCAUCCUACUGUUCUAUAGGAGAAUCUAAACCCAGUGGCAACAUCACAUGCAAAACACCUCCAUAUGAAAUUAAUCCUUCUUUUUCUUCCUAUUUCCUUGCAGAUCUUCAAAUUUGUGGUUCCCCGAGUAUAUAUAUGCCCAGGUUGUAUGCUUGAAGGUUGUAACUCCUAGCGAUGGACGGCAUUCCUAAAUUAACUGCAAAUGAAUUAAGAAGACAAAGAGACCGAGAGCGGUACGCGGCACUCAGCGUUGAGGAGAAGGCAGCACGAGUUCAAAAGAACCGUGAAAAUAGGAAGAGGAAGAAGUCUGCAUCUACAUCGGGCACAGGUGUGCUUGGCGAUAUUAAAAAUUUGAGUUUGCAUAAUGGAAGCCAAACUGUAGAUUGUCAGCCAUCAUUUCAACCUGUGCCUUCCUCCACACCCGUGUCUUCCUGCACACCUGUUUGCAGAAACCGACAAACCUAAGGAAGUACUUUUUGCGGCACACUUGCCGUAUACUGCUGCAUGCAGCUCAGGCAAUGUCACAGUUAUCAUGCAGGCUCCCAAUGAAGUGCUUUCCAAGUACCACUGAAAUGGUGAAAUUGGUGUAGUUAUCAUGCAUGCUCCCAAUGAGGCUUGCCCCAGUCUCUCUCGCGGCAAUGGUCUGCGUGUGCUACAAUCUGCAUCCCUCCACGCCUGAGUAAUCCCCUCCGUUCCCAUGUUGACCGACGCGGCCGCCGCUGUCUCCUCCAAAGCAGCAGCGGUCCUAGCCGAAUUGGCCAUCCCCAUUGCCAAACACCAUCACUGGCGCCGGCAGCCUCAAUCCGCGUCGAGUUUUUGUCUCCACCAGCAUAGUGGUCUCUACACAUGAGGCCUCGAGUGACAAAUCAGAGCAGCAAUCAUGCUUUGUUGUGGCUUUUAUCUCUGCCGAUCUCACGGCAAUCUAUCGACAUGCACAUUUGUAUUUUGUAGUUGGAUAAAAAAAAAGUAGCAAUAGUUGCCAUCUUUUUCUCUAGGAAAAACUGAUUUGUUUAUAUGCUUUCUCAGUUUAUGUCAGAGAAAAUGGUUAGUUGAGCUUGUCUCCUAUACUGAAUGUGCUUGGGGUUAACUGGGCUUUCAGUCAGUAAGCAUGGUAACAGACUCUUCAUUGAGUUAAGUAGUCCAAUAAUUAUUUUUUAAAGCAUUUUAGUCAGAGUAGAAACAAUUAUAUUUUUUCUCUACUGACUGCAUCUGGUAUUUUUGGUAAUUAGCUGGCAUCACGUACUUAUGUAUAUAGUCAUAUGGACAUCAAGCAUGUUUGUGGGAUAAUAUAAGAUGCUCUAGGCAGAGUAGAAACAUUUAUAUUUUACAUUCCUUUGUGUCAUAUUUUCCCUUUUUUAGGGAAGGGGGCAGAUCACUGCUCAAUAAUAAAUUUAUUCAUAGUUUA
Sequence
(XR_001540402.2):
CUAUACUAAUAUAAAAAUGAGGAGUUGCCCCCUCCAAUCUUACAGGUGAAAUCAUCUCGAUCAAUCCUUACCGUCCAUCUGCGUCUGUCCUGAUCCAUAUCCUCCAUCCAUCCGCCACGGAUUGUCCGCUUCCUCCUUCUCGCGCGAUGAACUUGCGCUGACCAUGCUGGACUCGCGCUCCUCCUCGCCCCGAUUCUCCUCGCCCCGCCUCAGUCCAACGGUGCUCCAGCCGAUGCUCCUCCUCCUCCACCCUAUUCCUCCUCGCAUUCCCCGUUCGCGCCGCCGGAGGGUCGUCCCCUUCCGCCGACGCCGCCAUACUCCACCGAUGCCCUCGCUGGAACCGAUUUCUUCCCCUUCCGCCGGCACCGCAAUCCACAUCACAGGUUCACAGGUCCUCGCCGGAACCGAUUUCUUCCCCUUCCGCCGUGCCACCGUCGCCGCAAUCCACUUCACAGGUUCAUCUUGCGCCGAUUGGUUCCCGUCAGAUUUGAGUAGGAACUAAAGGAACCAUCACUAUUCCCCUGAACCCUAAGUUGAUCCUGUGCAGCCCCUGUCAAUGGAUUUGUAUCCUUUCUUUCUUCUGAACUUUUCAGAUCACUGGAGGCUCUAAAUUUUGCUUGUAAUACAGAUGAUUAGCACUACUCACUGUGAAGCCAUCCUACUGUUCUUGUUCGUAGUUACUGAAAAAUAUAUAAAGCCAUCCUACUGUUCUAUAGGAGAAUCUAAACCCAGUGGCAACAUCACAUGCAAAACACCUCCAUAUGAAAUUAAUCCUUCUUUUUCUUCCUAUUUCCUUGCAGAUCUUCAAAUUUGUGGUUCCCCGAGUAUAUAUAUGCCCAGGUUGUAUGCUUGAAGGUUGUAACUCCUAGCGAUGGACGGCAUUCCUAAAUUAACUGCAAAUGAAUUAAGAAGACAAAGAGACCGAGAGCGGUACGCGGCACUCAGCGUUGAGGAGAAGGCAGCACGAGUUCAAAAGAACCGUGAAAAUAGGAAGAGGAAGAAGUCUGCAUCUACAUCGGGCACAGUUUUGAAUCAGAGCCUGUGCCUUUCUCCACACAUGGUGUGCUUGGCGAUAUUAAAAAUUUGAGUUUGCAUAAUGGAAGCCAAACUGUAGAUUGUCAGCCAUCAUUUCAACCUGUGCCUUCCUCCACACCCGUGUCUUCCUGCACACCUGUUUGCAGAAACCGACAAACCUAAGGAAGUACUUUUUGCGGCACACUUGCCGUAUACUGCUGCAUGCAGCUCAGGCAAUGUCACAGUUAUCAUGCAGGCUCCCAAUGAAGUGCUUUCCAAGUACCACUGAAAUGGUGAAAUUGGUGUAGUUAUCAUGCAUGCUCCCAAUGAGGAAAUAUAGGACAAAUAAACAGAUGACUGUUUUAGACAAGUUCACCCUAUUGAUAGCAUUAAAAUUAGAUGCUCAAGAUGGAUGAUAGUAACAACAAAAGCAAGUGGUUAAGUCCUCCAAUGUUUCAUCAUUUACGGAGGAGUUCAUAAGGCUUGCCCCAGUCUCUCUCGCGGCAAUGGUCUGCGUGUGCUACAAUCUGCAUCCCUCCACGCCUGAGUAAUCCCCUCCGUUCCCAUGUUGACCGACGCGGCCGCCGCUGUCUCCUCCAAAGCAGCAGCGGUCCUAGCCGAAUUGGCCAUCCCCAUUGCCAAACACCAUCACUGGCGCCGGCAGCCUCAAUCCGCGUCGAGUUUUUGUCUCCACCAGCAUAGUGGUCUCUACACAUGAGGCCUCGAGUGACAAAUCAGAGCAGCAAUCAUGCUUUGUUGUGGCUUUUAUCUCUGCCGAUCUCACGGCAAUCUAUCGACAUGCACAUUUGUAUUUUGUAGUUGGAUAAAAAAAAAGUAGCAAUAGUUGCCAUCUUUUUCUCUAGGAAAAACUGAUUUGUUUAUAUGCUUUCUCAGUUUAUGUCAGAGAAAAUGGUUAGUUGAGCUUGUCUCCUAUACUGAAUGUGCUUGGGGUUAACUGGGCUUUCAGUCAGUAAGCAUGGUAACAGACUCUUCAUUGAGUUAAGUAGUCCAAUAAUUAUUUUUUAAAGCAUUUUAGUCAGAGUAGAAACAAUUAUAUUUUUUCUCUACUGACUGCAUCUGGUAUUUUUGGUAAUUAGCUGGCAUCACGUACUUAUGUAUAUAGUCAUAUGGACAUCAAGCAUGUUUGUGGGAUAAUAUAAGAUGCUCUAGGCAGAGUAGAAACAUUUAUAUUUUACAUUCCUUUGUGUCAUAUUUUCCCUUUUUUAGGGAAGGGGGCAGAUCACUGCUCAAUAAUAAAUUUAUUCAUAGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.11%
ME_num:
MEP:
63.82%
HE_num:
HEP:
16.87%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.73
Avg Expression:
9.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.03942578907506 | 0.00412251606131408 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.44067286728445 | 0.0336239298713886 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.30089508054881 | 0.0412263648888749 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.72774728810139 | 0.000441814313089782 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.30321274414527 | 0.0252541749236014 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.03074372554194 | 0.00110577635374897 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.9801973385847 | 0.00289868735984577 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.98028139149598 | 0.00298156246099059 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.98035988824469 | 0.00290804085421175 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.20651749592575 | 0.000106298058479075 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.6247296831928 | 2.0213422137225e-05 |