Chr:
Chr10
Start:
2317163
End:
2317901
Strand:
+
Ref_name:
LOC4348069
Sequence
(XR_001540500.2):
ACGCUUGCUUUAUACAAGUGCUGGAGCUGCUAUUGCAUUUUGAGCAUCGAGCAGCCGCGGUACCCCAAUUCUCGGGCCUCACCAAACGCAGAAAACACACAUUAUAUACUGCAUUCGUGUCAGUAAUACAAUGGCAAAGAACCUGUCAAUCUCCGUUCAGCUGCUUCUCGUCCUCUUCGUUUUACUCGCUUUUGCCAGCGGCAUCCUCGCACAAGGUGGACCAAGCACCUGCACGGACAAUCCUGUGCAGCAAGAUUGCCCGCCAAUCCCUGGUAGAGGGAACUAAUAAUUAAUUAAUGUUGCCACCGGAUCCAUGCAUGGAUGGACGAUGCGGAGAAAUAUAUAAUUGAUCACGUGCCAUAUAGUAGUAUUUCUACGCAGCAAGUUUACUACGGAGUACUUUCUCAGUCAAUAAAACCCAUUUCUGGAUUUGAAUAUAGAUAUAGUGUUGAUGUGUUUUUGCCGUGCGUUGCUUGUAAUGAUUUGCUUUACCAAUAUAAAUAAUAUAACGGACAGUAUAACUGCCCGAGGAGAUAUUGUAUCCGGUAAUAAGUAAAUGUAUAUUCACCAUCUGGUGUCCAACACCGCCAAGUUAUAUAUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.7%
ME_num:
MEP:
15.45%
HE_num:
HEP:
15.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.99
Avg Expression:
1340.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.63793919123533 | 7.42942248855476e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.59817721790218 | 1.85748969350385e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 9.38936343904169 | 1.84315299803909e-14 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.5517192178683 | 4.46620685331228e-05 |
| 5 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 8.34793513648089 | 1.6390052514607e-07 |
| 6 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -3.19478204412353 | 0.0407139107940878 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.9345150699382 | 2.84357079855554e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.08007331498299 | 0.00128962946753603 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 8.56196102491165 | 2.58137660143515e-12 |