Chr:
Chr9
Start:
20305810
End:
20308467
Strand:
+
Ref_name:
LOC4347603
Sequence
(XR_001548541.2):
GAAACCCUAGCCAACACUGUUCCCCCAACCCUCUCUUCCUCUCUCGCUCUCUCCCCUGCCCUUGCGACGGCGCCGCCCUGUGUUCUCCUCGCCGCCAACGGCCUCACCGCCGCCGCCGCCGCCUUUGUUCCCUUCCCUGCUUCUCCUUGCCGACGACGGCCUCCCCCUCCCCAAUCUGGUGCUAGCUAGGGAUGGGAUCGAGGAGGGAGGCGGCAGGGAACGUAGCAGCGAGAGGCGUCAGUGGGCCGCGAGGCUUGCGCCGCGAGCCCCCAUAGCCGGGGGAGAGAAGGGCGCUAGGAAGGGGAGCAGGCGGCAGGGAGAGCGAGGGAGGAGGAAGGGUGGCGUGGGAGCAGUCCUUUCAAGGCACUCAAGACAGCGCCAGCUAUGUCCGGUGACGGUGUGCUCUGUCUCGACGGCCGGGGCUCGAGGUCGGUGGCGAGGCAGUCCGAUGGAUUUGCAUCUCAGGGGUCAGGAUGGAUGGAUUUAUUGCAGAACGGAUCCAUCAAUAUAUUUGCCGUCACCUUCAUGCAUUCCUCUGUGAUUAGGAAUGGAGAUCUGAGAGUUGAUACUAUUUGUUGCGUACUAAGCUCUAUAUGGGGAAAUUUUGCAAAUUUUUUGGUGCAGAAAACAUGAGCAGAAGGAGAUAUUGGAUGACUGACGAACUCACUUCGUUGCCGAAGUAACAUUAUUUGAUCUCUUCAGGUUCUCUCCCCUCUAUCAUUCUACCAUUUAUUCUUUGCUAUUUUGUUAGGCUAUCUAGCAGUAAAAAUUUGUGCCCUUUUAUAAUUUCCUCAAAAUGCUGGAAACUCCUAUUCUGAUUCUCUGCUGUUUCAGUGGCAAUAAUAGAUCUGGGUUUGGCAAAGUUCCAUUUUCUACUAUUUGUUGGUGAAAAAAUGAGGCUACCAUUCUCCUCCUGCAAAAUAAAUCAGGGUAGCGAUGCAGUCUAUAUAUAAAUAAGUGUAUGCUUCCCAUAUUCCAAUCCUUGUGACCUAGAUAAUGCCAAACAAAUUCAUCGUCAUUUUCUCAUGCAAUAUAUUGCCAUCACCUCCGUGCAGCAUGUCGAUUUCUAUACAAAGGCAUGACACGAGACAUUAUUUAGUGGCCUCUGUAAAUUCAAAUGAUGUUAAUUUCUGAGUUCAGUAAAACAUGUAGCAGUUCAUCUCUUAUGCUGAAGAAAGAUACCAGUUUUACUAUGUCAGCUGUUGGUUUGUUUAGGUGGGUUUGCACGCGGUGUACUCAAUCCUGAAUGUUUAGGUUACUGAUGAGAUGCCAUGUAUAUUGGUAAUUUUGUGUCACAAUUUCAGAUUUCAGAACCGUGUCAGUACAAAAAUCAGCUAAAAAUGGUGAGUACCAUAUUAGUGAAACAAUUCACUGUCAGUUCUUUGUGUUAAGCAAAUCAAAUACCGUUAUUGCCAGAAUGCAAAUUACAACAGUUCUAGCUUCCAUCUCAAAAUAUGGGUGCUUGCAGAGUUGUUUCAUUGGUUUACCCUUAGUACUAUUAUCUUGGUGCUCAUAUCUUCUAUGCAACAAAAAAUUGUUCUAAACUCUAUGUAAUUGUAGAUGUGAUAUAUAAUCAUUUUCAUGUAUUUUUUUAAAAUUACGUAGUUUCUUAAUUUAUCAAAUGAUAGGGCUCCACGAAGCACAAAAAAGGUAAAUACUGAAAGAUAAGUUCUGUGCACUUUGAGUUUUAUUUUCUUUCUUGGAACUCAGGACUUCUGAUGAUGAUAGAUUGAUAGCUCUAUUUUAUUCAUUCAUGCAUAUUUGCUUCAUAUUGUUCUUGAUUCAGUAGCUAGGCUGGUUGAGAGGGAUAAUUGAUAAAUUGUAUUUCCUAUCUUCUGAGAUUUCUUCUAACCGUGCAUGUCAGCUAAAACUAUGGCAUAAAAUCCAUAUUGCAAGUAUGGAGCUGGUGAGGUGCUUGACUGAUGGGGAGACAUUGUGAGGUGCUCGGCGCUGUCGGCAAGCCUUUGCUGGUCAUUAGGCCAACAAGGUGUAUUGCAGUGGCAGAGCAAGCCAGCCUGAAAAUUGCCUCCAGAUUUGCUGCAGCGGCAGAGCAAGCCUGAAAAUUGCCUCCAAAUUUGCUCUUUACAUGGUGAUAAAAUUAGGCUAUAAUGGUUGUAUUUUUUAGGUUGAACUGCAAACAUAUCAUUGUUGGUAUGACUGCAUGGAUAAUUUUGUUAACGGAUGUGCUAUGGUUCACACGUGCAGAUGUCUGUGGCCCUUCUUCCUCGGACAUUAUUUUUAUUAUCAUCAUCUAGGUUAGGAUAGAGGGCUUUUAAAAGAAAAUACUCUCUUAUUUGGUACGCAAAAUCCUACAGAUCUGAAUGCUCUUUUAUUUCAUAUGUAGUGCUUCCUGAAUCGUUUGUAUAAUUGUAUUUCCAUAGAGCUAGACCCUUUCGUCUCAAUUAUUUGUUUCUUUUCAUGUAUGAACAUUCUUUUUUUCGAUUGCCAAACCAGGUUGUUUGCCUGAUAAAUGAUAAUGUAACAAUGGUAACAGUAAGUUAAAAAAAAGGAUGAUGAUCAGUUUGAUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.03%
ME_num:
MEP:
5.69%
HE_num:
HEP:
92.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.47
Avg Expression:
30.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.19217865281927 | 5.30368407058471e-25 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.09312015081152 | 8.23232752257593e-12 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.1371356750625 | 1.39934902673218e-09 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.99681833900064 | 6.68509787227373e-13 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.99691367364158 | 6.842465028614e-13 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.99701034755408 | 6.8800693336504e-13 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.05128437410964 | 8.62024375908865e-05 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.35035550255388 | 6.89511115753759e-10 |