Chr:
Chr9
Start:
17302786
End:
17305739
Strand:
-
Ref_name:
LOC4347264
Sequence
(XR_001540050.2):
AGAUGUCAACUCGCGCUAAUUACCAGAUUGCCCUCUCCUCGGCCGCGGCGACGAAUCCCCUUUCCGCGGCGCCGCCGCCGCUAGGUGCCAUACCGUCGAUCUUCUCCGGCGGCGCCGAAGCACGCCGCGUCGAAGUCCUCUCCUCUCCUCCGUCCUCUCCCCUCUACUGGUUCGGCGGCGGCGCGGAGCGGAGAUCUCCAUCCGGGCCGAUUCGGUGAUUCUUCCUUCGGUUCGGCACAAAAUAGUCCUGAAAGAAAUAUUUGGCCUAGUGGCGCCGCCCUGCUGGAACUCUAAGACCACUCUUUUCCCAGACGCAGUAAUUGUUGCCGUGAGCAACGACAUGGAAGUCUGACGGGAUCAAGUUGCCCACAUCAUACCGAGUCCCAAUCUUUGUGAUCACCUUGUCAUCGAUCAUGGCGACGUAGACAUCUCCGUCAGCAGCAAGGAUGUUCAGCUUGCUCCCAGGAUGAAUUCCAUUUCUUGACCUCACCGCGGCCAAUGUGCUGAUCUCCUGCUUCAAGUUCCAGUCAAACACAUGGUCGUAGAACUGUACAGACAGACGGAAUGUUAGUUCGAGAUUAUGGUUAACAAAUAUCGAUUUCUGAUAGCGAUGGAGAUUAUCAAGCUGAGCACUCACAAUGCAGGGUACUCCAGGGUGUGUGAGGAUGUAGGCGUAGCCCUGCAUGACCUUGUCGGAGGGGAACGGCCAUGAGUUCUGUGUGGAGCCAGUGUCAUGAUUGUCGAUGAAGGUGACAGCCUUCUCCGGCAGCCAGCCAAUCAUCCCCGGCGCCUUGCCGUUGCCAUCCUUCAUCCGCCACAGCUCACCUUGCACCGCUGCCUGCAGCUCGCCCUUGGUCGUGAAGUCGAACGCCGAUGCAGGGCCACCGACGGCCUGCGCCCAGUUCACCAACUCCUGCCGGUCACCGUCCUGGUUCCACGACGGCUCACCGUUGCCGUCGUAACGCAUGUUGCUCCAUAUCUCGGCGACGACGAAGGACGGGUCGGUGUUGUCCACGUACGUCUUGGCGACGGUCGCCGAGUAUCCCUUGGCGAAGUCGAGGCGCCAGCCGUCGAAGCCGACGUCGGACUUGAGCCAGUUGAGCCAGUCGGAGAGCUCUGUCUGCACACGCGUGUUGAGGUGGUCGAUGUCGGGCGCCGCGCCGAAGUCUGCGCCAGUAUCGCGGUGACCGCGGCCGUUGGAGUACUGCGUGUCGUCGCUGCAGAUCAUGUCGGGACCCCAGUCGAGGCGGCUGUCCGGCGUGCCACCCUCGAAGAUGCAGUAGAUGCCACGGCUAUCCUUGUAAUCCGCGCACCGGUGGUUGAUGACGAUGUCGGCGACGCACUUGAUGCUCUUGCUGUGGAAGGCGGCGAUCAGCGACCUGAGCUCUGCCCCCGUCCCGUACUUGGACGCGUCCAGGUCGUAGAGCCGUCCCGGCAUGUAUCCCUGUGGCGCGACGGAGUGCGACGGCGGCGGGAGCCAGACGUGUGUGACUCCGGUCGCGGCGAUGUCGUCGACGUGGCUAUGGAGGAAGUUGUACCACCCACCCUGCUUCUUCCAUGACUCCCAGUUGAAUCCCUGCACCAACAUCAUGUCAACGUGCAGAUCAAAUGAUCAAUGAGACUCACCUGAAAGAGAACCUGAGCCUGGGCUAAGUGAGAGCCCAAACAGAGCAAGACGAAGAAUAGGAGGCAGCUCAUUGUGGUGGAAUGCUUUGCCAUUGCGUGUCUCAGAUACAAGCUGAGUUGUGUGGAUGGGGAAUGCUGGUGCAUGGGAAUUUAUAGGUGCAGCCCGGCAUGCAGACGUACCUCUCCGGGUGAAUUGAUUGUUCAAUUCGUUGGAUAAGUUCAGUUGCUCCUAACGAGAAACGCAACGGCACGGCGGCGACGAGUUGCGCUCAUUUAAAAGAGGAUAAAAAGGAGGCCAAUAGGAAGUUAGAUAAAGCCUUGGAUAGCGUUGUGGGCUCCAGGUAAAGCUUCCUUUUGUUCUUCCCGUUCCCGUUCCCUGGAGGAGGCGAGGCUGUUCCAGGCUGCAGCCUUCCUUCAUGCGAUCGUCUCUGUUGGCGCACAUCCACCUAAGGGCAGCUAGCUAAAACCAAUUCGAAUUUUGUUUCGCAAUUAAUGUUUUUUCUUUAUUUCCUAUGUUUGCUAGUUUUCUUCUUUGGUAUCCAAAUUACAUUAUACAAUUCAUCCAUCCAUCAUGAAUUUAAUUAUCCUUGUUGUACACGUACUUUUGCCGGACACUUCCUAGAAUUAGAGCCUCAUUGUUUUCUUUUUCAAGGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.07%
ME_num:
MEP:
73.78%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.93
Avg Expression:
53.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 7.76103873744876 | 1.66648313811473e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 8.33434858893422 | 4.41228536678246e-65 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.32505303439597 | 0.00339327920834081 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.37885248833428 | 0.00149892485044564 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.4268353145533 | 9.20515943426476e-12 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.9915110092727 | 0.00114975564356105 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.00716159026213 | 0.0184666361372726 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.81802430795107 | 5.02059117663411e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.46099783980693 | 2.76137193697707e-14 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.36787954546529 | 0.00188516225272182 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.23565608943333 | 0.0499721186638512 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.72386928479063 | 7.15822605508137e-08 |