Chr:
Chr9
Start:
15572902
End:
15580857
Strand:
+
Ref_name:
LOC4347120
Sequence
(XR_001540056.2):
CCCUCCAUUAACAUGUUUUUACCGUUUAAUCCCUGCAACCCCAAAGUUCUCCUGUCGCCGGGGUCGGCGGCGAGGCGGCGACGCCAUGGCCGCACGGCCCACAGGUCGCCGCCGCCGCGGCCUCGCCGUCGUCGUAUCAAGUAACAUCGCGCUCUUUGCGGGCGGCGACGAAGCCGACGAUGGUCCCGGAUUCUCCGGGGGGAGAUCGAAUGCUUCUCUCCGCCGCCGAGCGCCGCGGCAGGGUACGGUCUCAGCAGGUCGGCCAUCCAUUCCUCCCCCCCCCUCCUUCGCUCACUCUGUUCAUGGCGGUAGUCAGGCGGCUCUGAACGAGGGGGAGCUCGGAGCCCUUUUGAUUGGGAGUGCGGAAACCCUCGGUGGCGGCUCGUAACUCGUAGCCCCUGGCUCCGACCACGUCUCCGCCUGAUGGAGGUGGCAUCCAGAGAGAGAACAUCGAGCACGUACCUGCUGAUGCAGCCUGGAAGUUGUUACCCCUGGAAUCCCUGACAUGGAGAACCAACCUUGUUCUGUAGUUUUUAUGCGAUGCAUAGAAGUCCUCCACAGCCAUUGAGAUGCUGGUCCUUGCUUCCUUGCCAACUAACGAUCCCAGGUCCAGGAUCACCCCGACGUGGAAUUCAUCUGCUCCAGGGUCGUUCGUCGCAUUCAGAGCUACGGCACAUGAAUGGGCGAAGAGCAUCAGCAAGAGGAUGGCUCCAGGAGGUGCUUUCUCCAUUACAGGACUACCUGCUGAAAACUUGAGAAGACUUUACCGUCUCUGCAAGACUACAAUGGUCAAGAACUCAAGAUCACUAUCAUGUAUAUCAUAGUAUGAUACUUGGAAGUAUUUGAACCGUCUAAUUUGAUGCGUUUCAUGACGCGUUUAUCGCAGAUGGAUCCAAAACCAUAUAUGGAAUGAUUCGUAGGUGGUUUGUAGAAUGAACAGUCCAUGGAAUAGAUUCCAGAAACUGUUAAUGACUAAUUGGCGCCGUUAGGAGCAAAUCCUGAUUGUUCAGCAUCUGGGAAUUUCUCUUUAAUUGCCUCGAGCAAGCGAUGGCAAGUCAACUCUACUGAUUAUACUGAAUUGGUCAGUACAAUUACUGUAUUCUAACGACUUGUAUUAAUCCUUGACUCGUCCGUGAAAAUCGACUGCUCAUACUCUUUAAUAUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.9%
ME_num:
MEP:
2.03%
HE_num:
HEP:
78.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.61
Avg Expression:
34.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.15224604593711 | 1.87499600121299e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.10435015540412 | 6.85512637808733e-15 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.47639933154209 | 1.00163555534941e-09 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.52310919240808 | 1.52043735663335e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.61443617070165 | 3.32524174752706e-12 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.15083254875275 | 0.00078892525495196 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.15074121248231 | 0.000798749647006898 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.15066127696967 | 0.000795959652314056 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.40607429390488 | 7.75414899526899e-22 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.63101641007701 | 3.78014842946528e-51 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.70474028713343 | 9.61380584303821e-09 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.72786187883322 | 1.34395341327747e-25 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.60434665927091 | 6.08294397979896e-18 |