Chr:
Chr9
Start:
12572883
End:
12576157
Strand:
+
Ref_name:
LOC4346911
Sequence
(XR_001539767.2):
CCCGAGGCCCCACCUGUCAGUUCCUCCCCCAACCUCCAGCUCCCUAGCCGAAACCGCCGUUUCCUCCCCACGUCGCCAAAUCCACCCACGUCGCCGCCGAUCCUAACCCCUCCCGCUCGCGCCCUCGCGCCCAAACCGCAUGAAAUCGGUUCCCCUCCACCUCAUCUACACUUUCCCCACGUUUCCCCCAAAAAUCGGGCCGGGAUCGAGCUCCACUUCGCCCAUGAUGCCGCCCACGCCGCCGGCAGUUGCCGCCCCAAUCCGCCACUCCCCGGCUUCGCCGUCGCUCCCUCGGUCUAUAAAAAGCAUCCACGGGCUCCCUUCUCUCUUUUCCCCAAUUCCCCCGAGCUCUCCCGUGCCACAAAUCGCGCCCGCACCACGAGCCCGUGCGCCGCCGCUUUCCGGCGAGGUCCGGCCGUCGCUCCUCUCCGCCCUAGCCACCGCCGCUAGCAUCGCCACGCCUUGCUCUACCCCGGCCUCCACUCCGUUCUCCCGUUCCGCCACCAGAACCACCUCCCCACCGUGACCCCGAGCCACUUUUGCCAUUGUCACCUUCAGCCGCUCGCGGCGGGCAAUGGACGCCACGUCGGGCCGGCUCGUCUCCACCUUCAGCUUCGCAAGGCCGUGAGGAUGCCCGGCCGCCACUCCGCCCUCGCCAUCCGCUGCCGAGACUCCGUUCUCCCCGCGCGAGGUCACGGCGCCCCUUGGCCGCCCCUCUGUUGGCACCGCCCGUCGCCGGAGCGCCGCCGCCUCUCUCCGCCCGAGCUUCGCCGGCUGCCUCCAACCAUUGCCGUGCCCUCGCGUGUAGUUCUCGUCGUUUCGGAAGUCCGCGGUCGCGAGGAAAAGAGUUCGGAAGAUCAAAGUGAAGAAGCAAGGCAAGUCACACAUUCCCCUUGAGCAUGUUGAUCCCAAUUUAUAAAUGUUUUACCGUUUGCAAAUAAACAUGCAUGUCUUGCUAAUUACAUGGGAUCAGGGUUUACCUAUCUGCUCGCUUGUGCCAUGUUUACUUGAUAUCUGUCCUUUGUCAAUAUUGGGUAAUAAAUCGACUAGCUCAUGUUACUUAUGUGACAUAGCUAGAACUAUAUGCUUAGCCAUGCUUAAUUACCACUAGCUCAGUUGAUGGGAUAAUUACAGUAUUAGAUAUUUUUUUAGUAUCAAAAUGAGCUGCGUGCUCGAGACAUCUGGCCAUGCUUCAUUGUCGUAAUUACCCAACUAAAAUGCGACUGAUUGGUGGGUUGUGGGUGCAUGGUUUUGCUAGUCGCACCCAUGACAAUUAAGGACCGGUUCACGGGAUGCCCUGGAAGAAUUUAUCGUACUUACCACAAGCCAGCGUGGGCAACGGCUGGGCUUGUAGUAUAGCUUUCCUCUAGCCGACGUACCCAGGCGAGGGUGGGCGUGAUGGAGUUGGGUCGGCCGGGGUGUCUGGUUGAUCGGCUUCCGGAUUCACCGCGGCACGAAAGGGGGGCUACCCGUUGCCUGCUGGGGGCGGGGGCGAACCCUAAGGUGUGGUGCGAUCGGUUAGAGGGGGUUAUGCGAAGGGUCCUGUCACGGCCUCUUUCCGGUAUGUCGUGGUGACAUGUCGGCGCACGGAAACGUGUCGUGGGGCUGUGUCUUGUGGGUACAGUUGUACAUCUCUGCUCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGUCGACCAGAUUCACCGUGAUUAGUCCCACCUUAAUAAAUCGACUCAAUGCACUGUAGUUCAGGUGGGUUGGUUGGGCCUGUUCAACGUGGUGUAGCGUUGAUCAGUGGAGAUUUAAUGUUACUUUAAUUACUCAACAGUUUUACUGCUUUGCUCAAUAAAAUGUUUUACAACCGCCUUUAUGCAAAUAGCCACAAACCGUCCUUGUGUUCCCCUUGCACGUCUGCAUCGUUGGUGUGGCUUGCUGAGUACGGUAGUUGUACUUAGUCUUACUAUUAUUCCCCCUUUUCAGAAGUGUAGUGCUUCUGAGCUGAAGACAGAGUUAGAAGACCAAGGCUCAGACCCCAGUUAAGUUUUGCCUGUGGAGUGGAGCUGAAGCCCCGCUAGGAUUGCCUUUUUCCGCUGCUGCCGUUUUCUUUCGGUGUGAGGACUAAGUGCCUCUUCUGUAAGUAUUUACGCUUUUAUUUAUGUUUGGAACUGUAUAUUACUUGUCGUUUUGUGUACCCUGGCUGGUCUUGGACAGGGAUUUAAUGCACAAAAUAGUCUGGAAAUUUGGGCUAAAUUUCUAGGCGUGUGUACCCGACGACAAAAAACUGAAGGAUCUGAUACUCACCGAAGCUCAUCAAACUCAGUAUUCAAUUCAUCCCGGCACUACCAAAAUGUACCAGGACCUCAAAGAGAAAUUCUGGUGGGCCAGCAUGAGAAGAGAAAUAGCCGAAUUCGUCGCACUCUGCGAUGUUUGUCAACGAGUCAAAGCAGAACAUCAGCGACCCGCUGGACUGCUCUAGCCCCUUCAGAUCCCGGAAUGGAAAUGGGAAGAAAUCGGAAUGUUUACCCAACGGAUUUCCUAGAAAACUUCCACAAUUUUUUUUGCCCCCAAAACUUUCAGAUUUGUAACCAUCGAAUCGUUUCGAGAUUUGUGCAUGAAGAGAAAAAAAUUGCUAGAUAAAGAAAUUUUCACACAUGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.28%
ME_num:
MEP:
57.32%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.74
Avg Expression:
2.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.86123979252815 | 0.0446829607488293 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.25593412941277 | 1.01263706489678e-06 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.31950720210964 | 0.0440163708761697 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.33201851942057 | 0.00663081443382592 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.33210355221846 | 0.00679124552875559 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.33218513365327 | 0.00664925807870033 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.33857280033527 | 0.00311473002902418 |