Chr:
Chr9
Start:
9397123
End:
9398098
Strand:
-
Ref_name:
LOC4346718
Sequence
(XR_001540031.2):
UCGCCGAGAGCCAGCCAGACGAUCGAGCGGGUCAAACUGGCUCUCCGCUAGUCAUUAUAACAAGUCCUUAGUACUCACAUAUCGCGCUAUAUCCCCAAAGCACAUAGGGAUACUGUUUACACCCAAAUUGCCAACAGAUACAGGGCCCAUUUCUUGCUCUAGCUUGUCAGCUGGUGUUAUCGUAUCGAGUGUGAGCGAGGAGUUGCUGAUCUGAGACAGGAUGGGGCACUUCAUGAUGGACGACCAGAACAUCUUUGCAUGGUUAUGUACAUCAUGCGUGCUUUGUUGCUUCAUGGGAUGCGCAUACAUAUUCUACAUAAUCGUUACCAUCAUUCUUCCUCCGCUUCCUGUUUUCAUAAGGCACCACUGCGAGAAGGAGUUCUGGAUUUGCUUGCUGCUUACUAUAUGCGGCUACAUCCCUGGCGUCAUCUACUCCUUUUGGAUCAACAAAUUUGAUCUAUUUUGCGAGAAAAACGACGACUCGACCUAAUUAAGAUAUAUACUAGCUACUAAGAUUAUAACGUGCAAUCAAUUGGUCCCAAAUAUAGAAUCCUUAUAUCUCAGAUUGUAAUCAUGCAUUCUCGACAGAUACAGUGACUUGCUUUGGGGCUUUCAGAUGCUACUCCGUUACUGAGUGUUUAUAAAAGUAAUCUUUGGAUUUGUUAGGAAGAAUGUGUAAUGGGAUGAGGAUGAGAAUUACCCCUCCCAGUAGUUAAUAGAAAGGAUAUAUAUCUAGCCUCCUUGCGAGAAGAUUCAAGCACAACUGAUCAUAUUAUUCAUGCUACUCUCUGUUUGUCCAAUGUUCAGAAAACUACCAAUAGCAUCAUUAUCAGGGUGGAUGGCAAUAUUGAUUUUUAUUAUUACUUUCUACCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.58%
ME_num:
MEP:
29.27%
HE_num:
HEP:
21.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.86
Avg Expression:
28.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.52068992617111 | 0.043469043706474 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.80991266093366 | 9.47063196255058e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.9700790309157 | 2.56005826381169e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.56484924393216 | 1.40501065656263e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 9.47863123631558 | 3.81439586632625e-15 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.60131868452421 | 1.94059336924923e-05 |
| 7 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.8505502492867 | 0.000598716149390902 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.97650746127746 | 1.17109072256437e-15 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.76757533211203 | 3.48363967546249e-13 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.80331018919066 | 0.0119077721023002 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.97093300602916 | 2.01601815131499e-17 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.87273273239875 | 0.00967399205009248 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 7.79842497823345 | 4.824764426602e-10 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.44066880739594 | 0.0070708325912124 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 7.95375270120856 | 5.19361472357181e-11 |