RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4346688

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

8282557

End:

8286209

Strand:

-

Ref_name:

LOC4346688

Sequence
(XR_001540168.2):

GCGCGUGUCGCUCCUCAUCCUCUCCCGCACCCCCCUCUCUCUCUGCCGCAAUCGCCGCGCCUCCUCCGCAUCGGCGCGACCGCGCGUCAGGAUCCCGAUCACCCACAACCAUAGCGCCCGCCGAUCGCCCAUCGCCGCCUCGACGAGUCGCCUCGCGUCGAUCUCCUUGGCGCCACCACCGACCCCGCGUCGAUCUCCUCCGCGCCCCCUUCUAUGGCCAGAUCCAGAUCGGCGCCGAGCCCCCGCCACCAACGACGGCACCCCGGCAACCUACUCCUCGGCCGGCGGCGCGGAUCGUCGCCAUCACCACAGCUCGCUGAUCUCCUCCGACAACGCGAUGCCUUCACUCAGCCGCUGCUGCCGCCAGGGAGGCGACGCCCCCACCGAACCACGCCGGGACACUGACGCCCACCUCGCUGAUCCCCUCCCAUCCUCUGCCGCUCCCCUCGCGCCACCGACGAUCUCCGCCUCGACGACCGGCUCUGCGCCGUCACUCCUCGCGAUCCCCUCCCGUCCUCCUCUACGGAAACCCUGAUAUCUCCUUGACCUUCUCCUUGCCGCCACCGAUCUGCGUUGCUGAAUCAACGUUGCACACCUGGCCGGUCAUCAAUCUCCGCCGACCGCUGCUGUUCCCCGCCGGAAGCUCCACCGCCGCCCCGCACAGAUCAACGUGUUGCUGUCCCCGACACCUCAAGCUCCACCGCCACCCCUCCGCCGCUGCCCCCUUCUCCACCACUCCGCCACCGGCAAACAUUAAAAAAAGAACAACUGCUUUCAAGGGUGGCACCUCGCCAUUGUUUCAGACAACAGCUUCGCCGGUGAUUGUCCAUUCCCGUAUCACUUCGGACGGUUGCUUCUAUCCCUCACAAUCUCAUUCACUGAAUUCAAGGCACAACCAAAUUCUUCACUGCUCCCUUUUUUAACUUCGCUAUGGGAUCUGAAGUUUUUAGUUUUUUUCAUAAUGCCGUUUCUAUUUUGGAUUGUUCAGAGAUAAACCUUACUUGAAUUCAGAAGAAUUUAGUUUUUAGAAAUUAACUUUUUAGUUUAUAGGUUUGGAGAGAUGAACCUGACCUGAAUUCAGAAGAAAACCAACUUAGAAAACAUGCAGUUGCGUGUUGCUAAGAAAACAUUACCUGAAUUUAGUUUAGAAAACCUUACCUGCAUUUAGAAAUCCCUAAUAAAACAUGCAUUUGCGUGUUGCUAAAUUAUGCUUAGCAUCCUAAUACAUACUGAAAAAUGGGCAACAUGAUGAUGCUGUUUUACCACCUCCUGAUAUUUUUUAUUUUGCACUGUGCAUUCAGAACUGAUAUUUUAGUUUCAACUCCCUGUGUCACCUUCAGGCGUCAUCGGUGCAGAUCAAGCAUUCUAGCCAUUGUGAUAUGCUCUUUCACUAAUUUUAGUUUCUCUCUGAUUUUUCUUUUAACAAGAUCCAGUGAUUUAUUUCAAAAUUGAAAGCCUCGAAUUAUUUGAAUCUUCAAAUAUGAAGAAACAUGGACAGUCGUUCUUUCUUUAGCAAGGCACAAGAAAAUUCAGAUUCUACAUAACCUAGGCCAUGACAGGGCAUCACAUUUCUGAUUUAGUUGUUUGCAUGCUGGUUCCAACUGAAAAAAAAAAAGAUCUACCUUGUUUACAAUGAUGAUAUGCAAAAGUUCAAUUCGGUCUGUCACAUUAGUGAUAAAACAAAUCUGUCUACUUGGUUUGUGAGGUUGACACCUGGUGACAAUUCUGAUUAACCUUUUCUGAUUGAGCACUUGAAGAGAUAAUACACAAAAAAAGUUUUAUUUUAAACAGCCAAAGUGUAUGUACUCAGUCUCUUCAAUUUCCUAGCUGUACUAAAUCCUGUAUUAUGGUAUUUGGAUGGAAUUUGUGACUUAUAUUUUGGGUUCAAUAUUAAUUGUGCCCAUUGCUUGCGUGGUCAUCUGCUGAGGAGUACAUGCUGUUCUUGUGCAUGUGGAUGAGAAGCUGCGUGGAUGGAUUCAUGUGGCUGUUGGUUGCUCCAACAGUUAAAACUGGUGCUUGAUGUUGGUAUGGGUUCUUGACAAACCACGGCAUGACUAGGUGGCCCGUUGAGCUUGUCUCGGAUCUCAGUAGAAUUGUGUUUUCUCAAUUUGGUCCUGUCACAUUCAAAAAAUAAAAGAUAGUUCAGUCUAUGAAUGCACCAUGGAGUUGAUAGUGAACUGUACUAGAUUAGGAGUUUGCUAUGACUUAGUUUGGUUGAUUAUGAGGAUUUUUAUUAGUGAUUCUUCUCUUUCGGAAUAAAUACAAAUCAACCUAGCAUCUUCCUGUACAUGGGUUUAACUGUGUGACAGGAAAAUAUUAUUCUCCUUCGCGAAUCAUUCAAAGUUACUGCAUAUAACAAUUUCUACUGCUCCCAGAUUAGAGCAAUAUUGGCAAAAAUUAGAGCAAUGCAAACUACAGGCAAAAAUCAGAGCAUAAUUGUCCUUCUUCAGUUAUUAAUGUGCAAAAUUUAUUUAUGAACAUGUUUAUAUAUUGAAUCUUUCUUCAGUGGCCUGUUUGCAUUGAGUAUGACCAGCAAACAUUGGUUUUGGGUUUUGUAUAUUGUUUACUAUGGUAAUCCUUCUGAACUUAUGGUUUGAAUUUUAGGUUCUUUUAUCGAAGGUGAGCUUCUUUGCCUCUCAAGGAUCUGAUGUUGCGCAAGAUAAUGUGCUUGGGUUAUACAAGCAGAAUUGCUGUCAUAUGCAUUCUUUUGCACAUGAAAGAUCAUCCUUUUGCAUUUCAUGUGGCCUGCAAUGAUUUAUUUCGGGUGUGCUGCUAUACAUUGCCGAGUGGAACUCACUCCAGCUGUCCAGCGCCUGGUGGCGUCUGUCUUCCUCGCCAGUUUACAGCUGUCCUUGGGGAAGACCGAGCUGAGCUGCAGUAGGAAGAGCUUCUUGCCAGCUGACCUAGGCAAAUUCGCCAAGCUGCAGGUAACACUUCAAACAAGUAGAUCAGUCAUAACCGUCUGUGCUUCAGAGAAAUGGACAAGUUCAGAAUCGGGAAGACUAAUUUAGAGAGAACAGAGAUUUUCAGACUUCAGAACUUAGAUGUGAUCACUGAGCAGAGUUCUGUUUUUGCUAGGCUGAUUACACUGUUCUAUUAAAAUGGAAGUUUUUGAAUUGUCAAUAAUCUCCUACAAGUUCUUCUGUUUAAGGGCGAUUAUUUCUGGAGUGCUUCUAUAUGGUUUGUUCAGCUCUACCUUAGUGAAAGUACCUGUCGUCUCUGAUGGCGGAUAAUUAGUGAAAAUACAUUCACUUCUUUUCCAUAUAACGUUCAAAAUUCCUGCUAAUUAUUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

51

LEP:

10.37%

ME_num:

70

MEP:

14.23%

HE_num:

370

HEP:

75.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.57

Avg Expression:

20.72

Tip: OSA-LNC4346688 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-9.153993438855811.89620707029294e-11
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-8.966433744576532.19995291089631e-09