Chr:
Chr9
Start:
5598660
End:
5599810
Strand:
+
Ref_name:
LOC4346591
Sequence
(XR_001539706.2):
UUUGCCAGUUAAUUUGAUAGUUGCCCCUUAACAACUAAAUAGCGAACCUCUGAGCAGAUGGCCUUAAUAUCUAUCUACUGAAGCUUGGCUUCGACGACCUUAUCAUCGAAUUAGCGUGGCAGUUUAGCUCGGAAGACAGGCAGAGCAAGAGGUAGCACAUCCUCUCCGAAGGGAAGAUAUGAGCGACCAGAGCUCGUACCCUAACCCUGCUCAAGGGUACUACCAGGGUCCCCCAGCCUCGGCGGCGGCCGGCCAAGAUAACACGGCGGCCGGCGGUGGCAAGUCCAACGCAGCCAAGAAAGACCAACCGAGCUUCAUGGAUAACCUCCUUGCUUGCCUCCCCUGUGCCCGCCCAGCCGAAGCCAAGAACGACGCGAGCUAACUAACCUUGCUCCAUCAGGCAGCCUAGCACGGGAAGGAAGGCUGCAAAGCUACUGCAUGAUUAUGCCCAGUGUUUGUUUGAUUAUUCAGCAUCUAAGUAAGCACGUCGUUAAUUAGUUCAAUCCGGAUUGCUCAUUUGCGUUUUGUGUACUAGUGAACGAUUUAUGUAUUUGUCGGGGGCGCAUGUAAUUUAAUUUAUUCCCCUUUGGAUUCAUUAUUCAGUUUAUCUUGUCAUGAUUUUGUGAGGAAAGAAUCUGUUUUACGCAUGGUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.4%
ME_num:
MEP:
13.82%
HE_num:
HEP:
73.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.84
Avg Expression:
223.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.33532112347689 | 0.00212324607298193 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.34315780887888 | 2.89277316294094e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.2997665192373 | 1.55258130985262e-38 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.58280644164957 | 8.80562839782007e-24 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 11.3811083538565 | 2.95497806997048e-54 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.15949039788517 | 1.01763361174747e-10 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.0854470279541 | 0.0495570361326912 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.58096312504551 | 8.29393230501532e-07 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.19281446704922 | 0.00634639007038169 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.8839872074914 | 1.21677254443885e-06 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.43542685986423 | 2.73302209991415e-07 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.02157982978526 | 1.83083114572945e-06 |
| 13 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.01021786464307 | 0.0319315897552241 |
| 14 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.07169853497838 | 1.44195734262272e-09 |
| 15 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.242248616061 | 8.14055905882991e-15 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 11.1569956371354 | 2.23774756867557e-52 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.57378163987949 | 5.41890160083532e-05 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.01700542718599 | 0.0362326189432416 |
| 19 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.46435978896638 | 0.00312657970127579 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.46442563122946 | 0.00320690095364956 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.46452357476174 | 0.00313670728343758 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.37930222588127 | 8.16082714046321e-10 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 9.34598194235277 | 4.92404248849714e-34 |
| 24 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.72102061483925 | 3.65453286387566e-08 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 9.27228497584131 | 1.80988425555109e-36 |