Chr:
Chr9
Start:
2367155
End:
2370123
Strand:
-
Ref_name:
LOC4346451
Sequence
(XR_003238512.1):
CUCGCACCGCACGCGCGCACCCUCUCCCCUCUCCCCUCUCCCCUCUCCAUCCUCGCAUGUGUGUGUGUCCUCUCCCCUUUCGGCUCCCUCCAUCACGCCCCUCUUCCCAACCGCUCUCCCCGCUCCCUUCGCCGCCGCCUCCUCUGCUCGCGCGCCUCCGCCCGUCGCGCCGAUCCACGCCGCCACCGACAACGAUCUCCUCCGCGCUGCCCCUCCGCCCAUUGCAACGAUAUCGCACCGCCCUCCGUGCAUCCCCUAACUUGCGCCCCCAUCCCUCCCUUCACCAUCGGUGGCCGCCUCCCCUUCCAACCUCGCCGCCCUGCGAUUCCCCUAAGCGCUGCGCGUUCUCAUCCCUCCCCUCACCAUUUCCUUCGAACCUCUCCGGCCAUCCGCCCUCAUCCCUCCCCUCACUAUCCCCUUCCAACCUCGCCGGCCAUCCACCCGUUGCCCCCUGCCCGUCGGAGAUCGACGGCCGCCGGUUUCACUAACCGCCACAAUCAACCCCAUACCUGAGCCGAGAUUAUUUGUAUUUUGCGGGAGGAUCCUGGGAGCAAUUUAAAUCAAUGCAUAGUAUUUGAUUUUGACCAAAUCCACUAUAGUGAUGGCAGAUGAACAGUGAUACUACUUCAACAUCAGAAAAUUUCUGGGCAACGCUGGUGCCAACAUCAGCUACCCGCCGCAAACGCCUCUGGAUCUCGCAUCCCACCACGUCGAGGCAGGGUCGGUUAGGCCGGCAAAACAUUGACAGCAUCGCCCAACACUCACCACAGACAAUGAGAACAAAAGUAAGGAACUGUCUAAACAGACUGCAACAUACACAAAAAAAAUAUUGUGUAUAGUGAGGUUCUCACAAAAUAGUCAAGGUAUAUUAUGUUACUAAUUAACCAAUCUGAUGCUUGCUUACGAUCCUUCUUUUUGUAAUUAUUCUUAUUAUACGUUAUAUGUAACAUUUCGUGUUUUUUUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.3%
ME_num:
MEP:
22.15%
HE_num:
HEP:
71.34%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.55
Avg Expression:
17.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.46826197259472 | 1.01099538252332e-05 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.22498911500026 | 2.83972316042429e-06 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.37920254737103 | 0.000766836353256272 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.38932870657383 | 0.0247506101965801 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.38939167100266 | 0.0251445892662842 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.38951117553667 | 0.0248032111680135 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.55281441289439 | 2.57190966687448e-09 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.31274807817842 | 1.47492327922646e-10 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.06928171761956 | 0.000177135554883968 |