Chr:
Chr9
Start:
1328906
End:
1332299
Strand:
-
Ref_name:
LOC4346416
Sequence
(XR_001539775.2):
CACCCGAUUCCUCCACCGCACUUUCUGCCCGCGCGAUGACUCCGCCGCCACGAAUCCCCGCUGCCUCCUCCCUCCUCCUCCCUCCCCCAUGCCUAGGGAGGCCACGAUGGGCUCCUGGCCAGUCACCGCCGCCAGCAAUGCCCGACAACGCAACGCCCUACUACGCCAAGGGAAGGCCACGAGGGGCUUCCCGCUUGCCGUCGCGGCCGCCAUGCCCUCCUCCGCACUGGACCGCUGCCACUCACUCCGCGCCCGGCGACACUAUGGCCUCCCUCUGUCGCACCAAAGGGAGCUUCCCAUUCACCGCCUCCAUCGUGUCGUGAGGGACCUCCACUUGUGGCACUUCUGACGCUGCGACGCAGUGGAGGGCAUUGCCUCUGGUGGCACCAUGGUUCUACUGCCAUUUACCGGAAUCAUAUCAUUUAGUGGUUUCAAUCUCUUCUCCCCCUUCCAAUUCAUUGUUUUGUUUCUGCAAUUUGGUUGACAAAGCAAGUUCCUUUAUUGUCUGGACAUACUGUAUUUUGCCCAGUAGGUGUUCAAUUAAAUGCCACUGAAAUAAUCUGAAUCAGAGCCGGUUUAAUCAUGCAUCUACGUGGACACAUCCUUUAGUUUUAUUGUCUAAUAGGUAUUGAUUAUGUAUAUAGCAGUGCCAUAAGAAUUUUUCUCUACAGCUCAUUCAAGCAUUCAACAAUGCUGGGCUGAUUUUUGGAAUGAGCAAUAUAAGUUUAACAUUGUUCCAUGUUUUUGCUUGUAGGAUGUAUACUUCUAUUGUUGUCCUUACCCUCAUACCUGCGUAUGUGUAGUAAUAAAUAUUGGUUGCAUAAGAAUGACACAGAAGACUGAGUGGGUCUUUGUUGCGAACCCAAAAGGCCUAUAGAUCUUACUGCUAUGAUAGACGGUGAUGAUGACAACGAUGAUGAAAGUUAUCUCAUGAGAGGUCAAGGUUGAAUUUGAUUGGAAAUCAGCUCUGCAAUGUCCUCUCAAUCAAGGAGGAGCCUAUGUCGAUUACUUGAGCUUUUUAGCCAUGUUAAUGAUUGUUGAUAUCGCUUGUAAUCUUUGUCUCCAACAACACAUUGCUCACAAGUGGGCUGGUUGAACUCCAUAUGAAUGUGCAUAAACUCAAGUGAAAUUUGGGGCCACUUUAAAGAAGAGGGGCGAAGAAGAUCUGUAAGUUAGAAGGUGAGCAACAUGGAUGGUGAUGGUGUUCUGACGUCCAAAUAUGAAACCAGCCAACCAGCUUGGCAGCCUGAAGAUCUUUUGGACCAAAAGGGCAGGCCUCUUUCCCAAGGUGAAGCACUUCGUAGCUACAAUAUGCGAGUGCUCAGCCUAUACACCAUAUCCUUAUAUGAGUAUGCUGAGAGUUUUAUUCUCCAUUGAGGUGAAGUAUGCUCAAAAGUUUCGUUAAAAUAUAUUCAGUUUAGUGAUUUUGUUCAUGAACUAACUCACUUCACUACCAUGAACUCAUUUCUCCAAAAUUUUGGAUCUUUUAUUAGCAAAUCUAUGGACUGAAGUGGGGUUUUGGCCAGAGCUCCAAUCCCCUGCAAAUCCCAAAUGCAGUACGAGUAAUAUUUUGCAAAAUUAUGUACUCCAGUUCUAUUGGAAUUGAUGUAAAACCAACAAAUUCUUAGUUUUGUCAGUUAUUAAAACGCAUAGAUGCAUAUUGUGUAUGACAUUAUAUCAAACGUGCGUUGCACGUACAUGAUUACUAGUAACUACAAAAAGAACGUGCCU
Sequence
(XR_001539776.2):
CUCACCCGAUUCCUCCACCGCACUUUCUGCCCGCGCGAUGACUCCGCCGCCACGAAUCCCCGCUGCCUCCUCCCUCCUCCUCCCUCCCCCAUGCCUAGGGAGGCCACGAUGGGCUCCUGGCCAGUCACCGCCGCCAGCAAUGCCCGACAACGCAACGCCCUACUACGCCAAGGGAAGGCCACGAGGGGCUUCCCGCUUGCCGUCGCGGCCGCCAUGCCCUCCUCCGCACUGGACCGCUGCCACUCACUCCGCGCCCGGCGACACUAUGGCCUCCCUCUGUCGCACCAAAGGGAGCUUCCCAUUCACCGCCUCCAUCGUGUCGUGAGGGACCUCCACUUGUGGCACUUCUGACGCUGCGACGCAGUGGAGGGCAUUGCCUCUGGUGGCACCAUGGUUCUACUGCCAUUUACCGGAAUCAUAUCAUUUAGUGGUUUCAAUCUCUUCUCCCCCUUCCAAUUCAUUGUUUUGUUUCUGCAAUUUGGUUGACAAAGCAAGUUCCUUUAUUGUCUGGACAUACUGUAUUUUGCCCAGUAGGUGUUCAAUUAAAUGCCACUGAAAUAAUCUGAAUCAGAGCCGGUUUAAUCAUGCAUCUACGUGGACACAUCCUUUAGUUUUAUUGUCUAAUAGGUAUUGAUUAUGUAUAUAGCAGUGCCAUAAGAAUUUUUCUCUACAGCUCAUUCAAGCAUUCAACAAUGCUGGGCUGAUUUUUGGAAUGAGCAAUAUAAGUUUAACAUUGUUCCAUGUUUUUGCUUGUAGGAUGUAUACUUCUAUUGUUGUCCUUACCCUCAUACCUGCGUAUGUGUAGUAAUAAAUAUUGGUUGCAUAAGAAUGACACAGAAGACUGAGUGGGUCUUUGUUGCGAACCCAAAAGGCCUAUAGAUCUUACUGCUAUGAUAGACGGUGAUGAUGACAACGAUGAUGAAAGUUAUCUCAUGAGAGGUCAAGGUUGAAUUUGAUUGGAAAUCAGCUCUGCAAUGUCCUCUCAAUCAAGGAGGAGCCUAUGUCGAUUACUUGAGCUUUUUAGCCAUGUUAAUGAUUGUUGAUAUCGCUUGUAAUCUUUGUCUCCAACAACACAUUGCUCACAAGUGGGCUGGUUGAACUCCAUAUGAAUGUGCAUAAACUCAAGUGAAAUUUGGGGCCACUUUAAAGAAGAGGGGCGAAGAAGAUCUGUAAGUUAGAAGGUGAGCAACAUGGAUGGUGAUGGUGUUCUGACGUCCAAAUAUGAAACCAGCCAACCAGCUUGGCAGCCUGAAGAUCUUUUGGACCAAAAGGGCAGGCCUCUUUCCCAAGGUGAAGCACUUCGUAGCUACAAUAUGCGAGUGCUCAGCCUAUACACCAUAUCCUUAUAUGAGUAUGCUGAGAGUUUUAUUCUCCAUUGAGCAAAUCUAUGGACUGAAGUGGGGUUUUGGCCAGAGCUCCAAUCCCCUGCAAAUCCCAAAUGCAGUACGAGUAAUAUUUUGCAAAAUUAUGUACUCCAGUUCUAUUGGAAUUGAUGUAAAACCAACAAAUUCUUAGUUUUGUCAGUUAUUAAAACGCAUAGAUGCAUAUUGUGUAUGACAUUAUAUCAAACGUGCGUUGCACGUACAUGAUUACUAGUAACUACAAAAAGAACGUGCCU
Sequence
(XR_001539777.2):
UCUCACCCGAUUCCUCCACCGCACUUUCUGCCCGCGCGAUGACUCCGCCGCCACGAAUCCCCGCUGCCUCCUCCCUCCUCCUCCCUCCCCCAUGCCUAGGGAGGCCACGAUGGGCUCCUGGCCAGUCACCGCCGCCAGCAAUGCCCGACAACGCAACGCCCUACUACGCCAAGGGAAGGCCACGAGGGGCUUCCCGCUUGCCGUCGCGGCCGCCAUGCCCUCCUCCGCACUGGACCGCUGCCACUCACUCCGCGCCCGGCGACACUAUGGCCUCCCUCUGUCGCACCAAAGGGAGCUUCCCAUUCACCGCCUCCAUCGUGUCGUGAGGGACCUCCACUUGUGGCACUUCUGACGCUGCGACGCAGUGGAGGGCAUUGCCUCUGGUGGCACCAUGGUUCUACUGCCAUUUACCGGAAUCAUAUCAUUUAGUGGUUUCAAUCUCUUCUCCCCCUUCCAAUUCAUUGUUUUGUUUCUGCAAUUUGGUUGACAAAGCAAGUUCCUUUAUUGUCUGGACAUACUGUAUUUUGCCCAGUAGGUGUUCAAUUAAAUGCCACUGAAAUAAUCUGAAUCAGAGCCGGUUUAAUCAUGCAUCUACGUGGACACAUCCUUUAGUUUUAUUGUCUAAUAGGAUGUAUACUUCUAUUGUUGUCCUUACCCUCAUACCUGCGUAUGUGUAGUAAUAAAUAUUGGUUGCAUAAGAAUGACACAGAAGACUGAGUGGGUCUUUGUUGCGAACCCAAAAGGCCUAUAGAUCUUACUGCUAUGAUAGACGGUGAUGAUGACAACGAUGAUGAAAGUUAUCUCAUGAGAGGUCAAGGUUGAAUUUGAUUGGAAAUCAGCUCUGCAAUGUCCUCUCAAUCAAGGAGGAGCCUAUGUCGAUUACUUGAGCUUUUUAGCCAUGUUAAUGAUUGUUGAUAUCGCUUGUAAUCUUUGUCUCCAACAACACAUUGCUCACAAGUGGGCUGGUUGAACUCCAUAUGAAUGUGCAUAAACUCAAGUGAAAUUUGGGGCCACUUUAAAGAAGAGGGGCGAAGAAGAUCUGUAAGUUAGAAGGUGAGCAACAUGGAUGGUGAUGGUGUUCUGACGUCCAAAUAUGAAACCAGCCAACCAGCUUGGCAGCCUGAAGAUCUUUUGGACCAAAAGGGCAGGCCUCUUUCCCAAGGUGAAGCACUUCGUAGCUACAAUAUGCGAGUGCUCAGCCUAUACACCAUAUCCUUAUAUGAGUAUGCUGAGAGUUUUAUUCUCCAUUGAGGUGAAGUAUGCUCAAAAGUUUCGUUAAAAUAUAUUCAGUUUAGUGAUUUUGUUCAUGAACUAACUCACUUCACUACCAUGAACUCAUUUCUCCAAAAUUUUGGAUCUUUUAUUAGCAAAUCUAUGGACUGAAGUGGGGUUUUGGCCAGAGCUCCAAUCCCCUGCAAAUCCCAAAUGCAGUACGAGUAAUAUUUUGCAAAAUUAUGUACUCCAGUUCUAUUGGAAUUGAUGUAAAACCAACAAAUUCUUAGUUUUGUCAGUUAUUAAAACGCAUAGAUGCAUAUUGUGUAUGACAUUAUAUCAAACGUGCGUUGCACGUACAUGAUUACUAGUAACUACAAAAAGAACGUGCCU
Sequence
(XR_003238460.1):
UCUCACCCGAUUCCUCCACCGCACUUUCUGCCCGCGCGAUGACUCCGCCGCCACGAAUCCCCGCUGCCUCCUCCCUCCUCCUCCCUCCCCCAUGCCUAGGGAGGCCACGAUGGGCUCCUGGCCAGUCACCGCCGCCAGCAAUGCCCGACAACGCAACGCCCUACUACGCCAAGGGAAGGCCACGAGGGGCUUCCCGCUUGCCGUCGCGGCCGCCAUGCCCUCCUCCGCACUGGACCGCUGCCACUCACUCCGCGCCCGGCGACACUAUGGCCUCCCUCUGUCGCACCAAAGGGAGCUUCCCAUUCACCGCCUCCAUCGUGUCGUGAGGGACCUCCACUUGUGGCACUUCUGACGCUGCGACGCAGUGGAGGGCAUUGCCUCUGGUGGCACCAUGGUUCUACUGCCAUUUACCGGAAUCAUAUCAUUUAGUGGAUGUAUACUUCUAUUGUUGUCCUUACCCUCAUACCUGCGUAUGUGUAGUAAUAAAUAUUGGUUGCAUAAGAAUGACACAGAAGACUGAGUGGGUCUUUGUUGCGAACCCAAAAGGCCUAUAGAUCUUACUGCUAUGAUAGACGGUGAUGAUGACAACGAUGAUGAAAGUUAUCUCAUGAGAGGUCAAGGUUGAAUUUGAUUGGAAAUCAGCUCUGCAAUGUCCUCUCAAUCAAGGAGGAGCCUAUGUCGAUUACUUGAGCUUUUUAGCCAUGUUAAUGAUUGUUGAUAUCGCUUGUAAUCUUUGUCUCCAACAACACAUUGCUCACAAGUGGGCUGGUUGAACUCCAUAUGAAUGUGCAUAAACUCAAGUGAAAUUUGGGGCCACUUUAAAGAAGAGGGGCGAAGAAGAUCUGUAAGUUAGAAGGUGAGCAACAUGGAUGGUGAUGGUGUUCUGACGUCCAAAUAUGAAACCAGCCAACCAGCUUGGCAGCCUGAAGAUCUUUUGGACCAAAAGGGCAGGCCUCUUUCCCAAGGUGAAGCACUUCGUAGCUACAAUAUGCGAGUGCUCAGCCUAUACACCAUAUCCUUAUAUGAGUAUGCUGAGAGUUUUAUUCUCCAUUGAGGUGAAGUAUGCUCAAAAGUUUCGUUAAAAUAUAUUCAGUUUAGUGAUUUUGUUCAUGAACUAACUCACUUCACUACCAUGAACUCAUUUCUCCAAAAUUUUGGAUCUUUUAUUAGCAAAUCUAUGGACUGAAGUGGGGUUUUGGCCAGAGCUCCAAUCCCCUGCAAAUCCCAAAUGCAGUACGAGUAAUAUUUUGCAAAAUUAUGUACUCCAGUUCUAUUGGAAUUGAUGUAAAACCAACAAAUUCUUAGUUUUGUCAGUUAUUAAAACGCAUAGAUGCAUAUUGUGUAUGACAUUAUAUCAAACGUGCGUUGCACGUACAUGAUUACUAGUAACUACAAAAAGAACGUGCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.28%
ME_num:
MEP:
51.83%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.72
Avg Expression:
3.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.4033438909872 | 8.93942888257749e-06 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.38502081622656 | 0.00339093952626937 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.90084271094898 | 0.0087258025740125 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.20605109510734 | 1.76443644140187e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.93089626068396 | 7.41138939589221e-06 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.73858166856748 | 0.00360337339125847 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.53412671281721 | 0.0150035322554083 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.3843712086992 | 1.25988718042154e-09 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.42526607425842 | 0.00731908257796155 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.11875113506747 | 1.0495191482016e-06 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.20049715720947 | 2.73728163516642e-05 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.94943794544537 | 0.0256865231552411 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.73691763146522 | 0.00237430788115521 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.94949428073488 | 0.0260514612526547 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.94965933622744 | 0.0257389360045309 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.55633275602044 | 2.98696981401453e-20 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.28611555074952 | 0.000431136665369311 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.6009558223915 | 0.000269736925575885 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.91104444508196 | 0.00852572589636312 |