Chr:
Chr8
Start:
28311334
End:
28315149
Strand:
+
Ref_name:
LOC4346349
Sequence
(XR_001548504.2):
UCGCCCUCCACUGAUCCCAACGGUGACUGGGUGUCGGUGGAGGACGAGCCGCCACCGAGUCCUAUGCCGCCGGAUCAACGUCGACCACCUGGCCAGUCUCCACCACAUCCCGAAUCCCGGCCUCCCACCACCCCGUCCCGCUGCGGCCUCCGUCAUCGACAGUCUGUCGCCGCCGCAUCUCCUUUCUCCCCUUCAUUACCGAGGGGCAUCUCUAUCUACAAAAGGAAAAAAAUUGAGGUAGGACAGAAGGAGCUGGCCACAUGCCUGAAGAGAACUGAUCAUCUCAGUGCAUGAUAACUGUUGCUCCUCGAUGACCAAGUCCCUGUGGAAGGCUUUCAAUUUUGGCAAGUUCUGAAUUUGAGCGAGACUGAAGGGGAACUCAAUUGUCUAAAAAAUGAAAUGGAAAUUGCUGUCCAUGGUGACUCUAUUGACCAUUGCUCAGAUCAAAGAAUCAUCUACUCGGUUGGUUAAGAAUCAUGAUAUGCUGUAUAUGCCCUCCAACCUUGGUGACCUGAAGGAAGUGGUUGUUCAUAUUCAGAGGGAUAUAAAAACUGUUGGUGAUUCCAUGUCUAUCAAGAUGCAAUAUUUGCAGAGCACUGCAAAUGACAUUGCAAAUGUUGUUGGCAAAUCAUUGGAGAAUCAUAUGCAGCUUUUGGAUGGGCAGAGUAAGGCCAUGGUCAGUCUGAUUAAUCUGUAGAGCUUGCAGCAUGAAUUGGAACACAAAAAGUUAGUAUAAAACAAUCAAACUUUAUACUCUUGAUUAUAUUCCCAUUUGUAGAUAUUAUAUUCCCAUUGAAUGUGGGUAAGAUGGGAUUCAUUUUUUAGGCUAUUUUUACCACAGUGGGGAUUAUCUGCAGUACGGCACUUGCAGUAGCAGCCACUGACAUUGAAUGUGGGCAGUACUUCCUUGUUGAUUCCUGACUCCCAUAUAAACAAAGAGGACUUGGAGCUGCUACAUUACGUCGACAGUGACCGUGCUUUCAGAUUCAGCAUAUGUGGCUUAUAUCGAUUGACCGAUCGAGGCGUGGCCCGUGCUGACCAACGGCGUUGCCGCGGCUGCCAUCUUCACUCAGGUGGGGUUCUGCCAUCUUCACUAUCACCGACAAAUUGAUCAGUUAAAAAAUUGUUGUCUUCUCCAACAAAUACAUGAUACAUCUGCUAUUCUGUACUUUCUCAUAGUUGCUCUGAUUCUCCAAAUGGUUUCGAUUGAGUUUCUAUUAGGUUUUCCUCUCUUUGUCAAAACUACAAGGGAAGGCCAUGUAUGCCAUGGGACUGAUUGCACUGCAGAACAAGUUCCUUCGUGCCUGGUAGUGCGACUUUAUUUCUCUAUUGCUAUAUGUGGUGAAUGAAAAUUGUGGUGGAAUAUUCUGUUUUUGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUUUGUAAUAAUUGCAGCCUAUUUUGUUGUUUAUUAUGUACUCUGAAAGAGUGAAUAAUGUACUUUGGGAGAUGAAUUAAGAAAUGAAUUUCCAAAUUUGAUUGCAUGA
Sequence
(XR_001548506.2):
UCGCCCUCCACUGAUCCCAACGGUGACUGGGUGUCGGUGGAGGACGAGCCGCCACCGAGUCCUAUGCCGCCGGAUCAACGUCGACCACCUGGCCAGUCUCCACCACAUCCCGAAUCCCGGCCUCCCACCACCCCGUCCCGCUGCGGCCUCCGUCAUCGACAGUCUGUCGCCGCCGCAUCUCCUUUCUCCCCUUCAUUACCGAGGGGCAUCUCUAUCUACAAAAGGAAAAAAAUUGAGGUAGGACAGAAGGAGCUGGCCACAUGCCUGAAGAGAACUGAUCAUCUCAGUGCAUGAUAACUGUUGCUCCUCGAUGACCAAGUCCCUGUGGAAGGCUUUCAAUUUUGGCAAGUUCUGAAUUUGAGCGAGACUGAAGGGGAACUCAAUUGUCUAAAAAAUGAAAUGGAAAUUGCUGUCCAUGGUGACUCUAUUGACCAUUGCUCAGAUCAAAGAAUCAUCUACUCGGUUGGUUAAGAAUCAUGAUAUGCUGUAUAUGCCCUCCAACCUUGGUGACCUGAAGGAAGUGGUUGUUCAUAUUCAGAGGGAUAUAAAAACUGUUGGUGAUUCCAUGUCUAUCAAGAUGCAAUAUUUGCAGAGCACUGCAAAUGACAUUGCAAAUGUUGUUGGCAAAUCAUUGGAGAAUCAUAUGCAGCUUUUGGAUGGGCAGAGUAAGGCCAUGGUCAGUCUGAUUAAUCUGUAGAGCUUGCAGCAUGAAUUGGAACACAAAAAGUUAGUAUAAAACAAUCAAACUUUAUACUCUUGAUUAUAUUCCCAUUUGUAGAUAUUAUAUUCCCAUUGAAUGUGGGUAAGAUGGGAUUCAUUUUUUAGGCUAUUUUUACCACAGUGGGGAUUAUCUGCAGUACGGCACUUGCAGUAGCAGCCACUGACAUUGAAUGUGGGCAGUACUUCCUUGUUGAUUCCUGACUCCCAUAUAAACAAAGAGGACUUGGAGCUGCUACAUUACGUCGACAGUGACCGUGCUUUCAGAUUCAGCAUAUGUGGCUUAUAUCGAUUGACCGAUCGAGGCGUGGCCCGUGCUGACCAACGGCGUUGCCGCGGCUGCCAUCUUCACUCAGGUUUUCCUCUCUUUGUCAAAACUACAAGGGAAGGCCAUGUAUGCCAUGGGACUGAUUGCACUGCAGAACAAGUUCCUUCGUGCCUGGUAGUGCGACUUUAUUUCUCUAUUGCUAUAUGUGGUGAAUGAAAAUUGUGGUGGAAUAUUCUGUUUUUGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUUUGUAAUAAUUGCAGCCUAUUUUGUUGUUUAUUAUGUACUCUGAAAGAGUGAAUAAUGUACUUUGGGAGAUGAAUUAAGAAAUGAAUUUCCAAAUUUGAUUGCAUGA
Sequence
(XR_001548509.2):
UCGGCACCGCACGGCCCGUCUCCCUCUCUCUCGCUCUCCCACCGCGCCUCUCCCAGAUUCCGCUCCCGCACGCGCGACGCCGGAAACCGCUCCGCCAUCAGCGCUCCCCUCCCUAUCAGCCGCGGCGCCGUCCUCUGCCUCACCGAUCUGCCAUCGCCGCCGGCUCGCCCUCCACCGAUCCCCAUCGCUUGUCCUCCGCCCGGAUUCACGUCGCCGCCGACGCCUUCCACGCUGUUCUGCUCCACCGAUCCCUGCCGCACAAAGUCCUCUCGUGGCCAGGUCGCCGCCGACGCCUUCCGUGGUGAUCCGAUCUGCCACCGAUCCCCGCCGCCGGCUCGCCCUCCACUGAUCCCAACGGUGACUGGGUGUCGGUGGAGGACGAGCCGCCACCGAGUCCUAUGCCGCCGGAUCAACGUCGACCACCUGGCCAGUCUCCACCACAUCCCGAAUCCCGGCCUCCCACCACCCCGUCCCGCUGCGGCCUCCGUCAUCGACAGUCUGUCGCCGCCGCAUCUCCUUUCUCCCCUUCAUUACCGAGGGGCAUCUCUAUCUACAAAAGGAAAAAAAUUGAGGUAGGACAGAAGGAGCUGGCCACAUGCCUGAAGAGAACUGAUCAUCUCAGUGCAUGAUAACUGUUGCUCCUCGAUGACCAAGUCCCUGUGGAAGGCUUUCAAUUUUGGCAAGUUCUGAAUUUGAGCGAGACUGAAGGGGAACUCAAUUGUCUAAAAAAUGAAAUGGAAAUUGCUGUCCAUGGUGACUCUAUUGACCAUUGCUCAGAUCAAAGAAUCAUCUACUCGGUUGGUUAAGAAUCAUGAUAUGCUGUAUAUGCCCUCCAACCUUGGUGACCUGAAGGAAGUGGUUGUUCAUAUUCAGAGGGAUAUAAAAACUGUUGGUGAUUCCAUGUCUAUCAAGAUGCAAUAUUUGCAGAGCACUGCAAAUGACAUUGCAAAUGUUGUUGGCAAAUCAUUGGAGAAUCAUAUGCAGCUUUUGGAUGGGCAGAGUAAGGCCAUGGUCAGUCUGAUUAAUCUGUAGAGCUUGCAGCAUGAAUUGGAACACAAAAAUGGGGAUUAUCUGCAGUACGGCACUUGCAGUAGCAGCCACUGACAUUGAAUGUGGGCAGUACUUCCUUGUUGAUUCCUGACUCCCAUAUAAACAAAGAGGACUUGGAGCUGCUACAUUACGUCGACAGUGACCGUGCUUUCAGAUUCAGCAUAUGUGGCUUAUAUCGAUUGACCGAUCGAGGCGUGGCCCGUGCUGACCAACGGCGUUGCCGCGGCUGCCAUCUUCACUCAGGUUUUCCUCUCUUUGUCAAAACUACAAGGGAAGGCCAUGUAUGCCAUGGGACUGAUUGCACUGCAGAACAAGUUCCUUCGUGCCUGGUAGUGCGACUUUAUUUCUCUAUUGCUAUAUGUGGUGAAUGAAAAUUGUGGUGGAAUAUUCUGUUUUUGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUUUGUAAUAAUUGCAGCCUAUUUUGUUGUUUAUUAUGUACUCUGAAAGAGUGAAUAAUGUACUUUGGGAGAUGAAUUAAGAAAUGAAUUUCCAAAUUUGAUUGCAUGA
Sequence
(XR_003238240.1):
UCGCCCUCCACUGAUCCCAACGGUGACUGGGUGUCGGUGGAGGACGAGCCGCCACCGAGUCCUAUGCCGCCGGAUCAACGUCGACCACCUGGCCAGUCUCCACCACAUCCCGAAUCCCGGCCUCCCACCACCCCGUCCCGCUGCGGCCUCCGUCAUCGACAGUCUGUCGCCGCCGCAUCUCCUUUCUCCCCUUCAUUACCGAGGGGCAUCUCUAUCUACAAAAGGAAAAAAAUUGAGGUAGGACAGAAGGAGCUGGCCACAUGCCUGAAGAGAACUGAUCAUCUCAGUGCAUGAUAACUGUUGCUCCUCGAUGACCAAGUCCCUGUGGAAGGCUUUCAAUUUUGGCAAGUUCUGAAUUUGAGCGAGACUGAAGGGGAACUCAAUUGUCUAAAAAAUGAAAUGGAAAUUGCUGUCCAUGGUGACUCUAUUGACCAUUGCUCAGAUCAAAGAAUCAUCUACUCGGUUGGUUAAGAAUCAUGAUAUGCUGUAUAUGCCCUCCAACCUUGGUGACCUGAAGGAAGUGGUUGUUCAUAUUCAGAGGGAUAUAAAAACUGUUGGUGAUUCCAUGUCUAUCAAGAUGCAAUAUUUGCAGAGCACUGCAAAUGACAUUGCAAAUGUUGUUGGCAAAUCAUUGGAGAAUCAUAUGCAGCUUUUGGAUGGGCAGAGUAAGGCCAUGGUCAGUCUGAUUAAUCUGUAGAGCUUGCAGCAUGAAUUGGAACACAAAAAUGGGGAUUAUCUGCAGUACGGCACUUGCAGUAGCAGCCACUGACAUUGAAUGUGGGCAGUACUUCCUUGUUGAUUCCUGACUCCCAUAUAAACAAAGAGGACUUGGAGCUGCUACAUUACGUCGACAGUGACCGUGCUUUCAGAUUCAGCAUAUGUGGCUUAUAUCGAUUGACCGAUCGAGGCGUGGCCCGUGCUGACCAACGGCGUUGCCGCGGCUGCCAUCUUCACUCAGGUGGGGUUCUGCCAUCUUCACUAUCACCGACAAAUUGAUCAGUUAAAAAAUUGUUGUCUUCUCCAACAAAUACAUGAUACAUCUGCUAUUCUGUACUUUCUCAUAGUUGCUCUGAUUCUCCAAAUGGUUUCGAUUGAGUUUCUAUUAGGUUUUCCUCUCUUUGUCAAAACUACAAGGGAAGGCCAUGUAUGCCAUGGGACUGAUUGCACUGCAGAACAAGUUCCUUCGUGCCUGGUAGUGCGACUUUAUUUCUCUAUUGCUAUAUGUGGUGAAUGAAAAUUGUGGUGGAAUAUUCUGUUUUUGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUUUGUAAUAAUUGCAGCCUAUUUUGUUGUUUAUUAUGUACUCUGAAAGAGUGAAUAAUGUACUUUGGGAGAUGAAUUAAGAAAUGAAUUUCCAAAUUUGAUUGCAUGA
Sequence
(XR_003238241.1):
UCGCCCUCCACUGAUCCCAACGGUGACUGGGUGUCGGUGGAGGACGAGCCGCCACCGAGUCCUAUGCCGCCGGAUCAACGUCGACCACCUGGCCAGUCUCCACCACAUCCCGAAUCCCGGCCUCCCACCACCCCGUCCCGCUGCGGCCUCCGUCAUCGACAGUCUGUCGCCGCCGCAUCUCCUUUCUCCCCUUCAUUACCGAGGGGCAUCUCUAUCUACAAAAGGAAAAAAAUUGAGGUAGGACAGAAGGAGCUGGCCACAUGCCUGAAGAGAACUGAUCAUCUCAGUGCAUGAUAACUGUUGCUCCUCGAUGACCAAGUCCCUGUGGAAGGCUUUCAAUUUUGGCAAGUUCUGAAUUUGAGCGAGACUGAAGGGGAACUCAAUUGUCUAAAAAAUGAAAUGGAAAUUGCUGUCCAUGGUGACUCUAUUGACCAUUGCUCAGAUCAAAGAAUCAUCUACUCGGUUGGUUAAGAAUCAUGAUAUGCUGUAUAUGCCCUCCAACCUUGGUGACCUGAAGGAAGUGGUUGUUCAUAUUCAGAGGGAUAUAAAAACUGUUGGUGAUUCCAUGUCUAUCAAGAUGCAAUAUUUGCAGAGCACUGCAAAUGACAUUGCAAAUGUUGUUGGCAAAUCAUUGGAGAAUCAUAUGCAGCUUUUGGAUGGGCAGAGUAAGGCCAUGGUCAGUCUGAUUAAUCUGUAGAGCUUGCAGCAUGAAUUGGAACACAAAAAGCUAUUUUUACCACAGUGGGGAUUAUCUGCAGUACGGCACUUGCAGUAGCAGCCACUGACAUUGAAUGUGGGCAGUACUUCCUUGUUGAUUCCUGACUCCCAUAUAAACAAAGAGGACUUGGAGCUGCUACAUUACGUCGACAGUGACCGUGCUUUCAGAUUCAGCAUAUGUGGCUUAUAUCGAUUGACCGAUCGAGGCGUGGCCCGUGCUGACCAACGGCGUUGCCGCGGCUGCCAUCUUCACUCAGGUGGGGUUCUGCCAUCUUCACUAUCACCGACAAAUUGAUCAGUUAAAAAAUUGUUGUCUUCUCCAACAAAUACAUGAUACAUCUGCUAUUCUGUACUUUCUCAUAGUUGCUCUGAUUCUCCAAAUGGUUUCGAUUGAGUUUCUAUUAGGUUUUCCUCUCUUUGUCAAAACUACAAGGGAAGGCCAUGUAUGCCAUGGGACUGAUUGCACUGCAGAACAAGUUCCUUCGUGCCUGGUAGUGCGACUUUAUUUCUCUAUUGCUAUAUGUGGUGAAUGAAAAUUGUGGUGGAAUAUUCUGUUUUUGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUUUGUAAUAAUUGCAGCCUAUUUUGUUGUUUAUUAUGUACUCUGAAAGAGUGAAUAAUGUACUUUGGGAGAUGAAUUAAGAAAUGAAUUUCCAAAUUUGAUUGCAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
17.68%
HE_num:
HEP:
81.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.50
Avg Expression:
17.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.02721212067757 | 4.89234331135702e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.07966898259875 | 3.93414779012869e-07 |