Chr:
Chr8
Start:
16812408
End:
16815027
Strand:
+
Ref_name:
LOC4345382
Sequence
(XR_001548517.2):
UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGGUAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA
Sequence
(XR_001548518.2):
UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA
Sequence
(XR_001548516.2):
GUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA
Sequence
(XR_001548519.2):
UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGCCGCAUCACCGUCUGUUUCCGCCAUGGCAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA
Sequence
(XR_001548520.2):
UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGGUAGCCGCAUCACCGUCUGUUUCCGCCAUGGCAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA
Sequence
(XR_003238277.1):
UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGGUAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGAAACUUCAAUGCUCGAGUUGUCGAGCUAGGUUGGGGAUAUUUGAUUCUUUAAUCUAUAUAGGGUUUGGUAGCGUGCACUCAGCCCUUAGGACUUAACAUGACAGUAAGUGAGAAAAAGGGAAAACAGUGAGUUUUUGCAUCAGGCUGGCUCAACUAAAUGAUUUUUAUGUCCCUUUGGUAAUGAAAAGAGAUUUUUCUGUUGUAUACCAUCUCAUAUGCUCUUAAGAUACAUUUUGAUUUACAUAACAAUUAUGUUUCUAUGUGAAAGAAACUAAAUAUAUAUUUGGUCAUUUUGGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
10.16%
HE_num:
HEP:
70.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.89
Avg Expression:
105.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.46266519653064 | 3.18552284016064e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.39878898810614 | 1.08662890355711e-06 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.01994875631004 | 5.47553538366583e-05 |
4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.57839903638309 | 1.21362830529005e-12 |
5 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -8.99075925607133 | 1.59484696943749e-09 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.44378435616015 | 1.95868507003684e-09 |