OSA-LNC4345382


Function Link


Basic Info

Chr:

Chr8

Start:

16812408

End:

16815027

Strand:

+

Ref_name:

LOC4345382

Sequence
(XR_001548517.2):

UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGGUAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA

Sequence
(XR_001548518.2):

UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA

Sequence
(XR_001548516.2):

GUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA

Sequence
(XR_001548519.2):

UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGCCGCAUCACCGUCUGUUUCCGCCAUGGCAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA

Sequence
(XR_001548520.2):

UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGGUAGCCGCAUCACCGUCUGUUUCCGCCAUGGCAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGUACCAUCUCAUGAGGUUCGUGGUGGUUUUCGAUUCUAUUUAUGUACAGGUGAUCACUUUAUGAACAAUAAUCAUCUUGAUUUUCCUCCAUCAAUGUUCAUGUUACUUGCUGUUGGUAUUGCUAACUAGACUUCGUUUAAGAGAAAUUUCUUCUGUUGUUUAGCUACCUUUGGUAGGGUUAUUUCACUUCUGAAAUUUAUUCAUUUAUUUACCCCAUAUUUGCUAUUUAGACAAAA

Sequence
(XR_003238277.1):

UGUGGCAAUUUAAUUACCAAAAUAAUAACUAUUUCUAUCACUCUUAAUGUUUAGGUAACCUGCCCAAGUGAAUUGUAUUAACUAAUUGAUGUUUUUUUGGGGGGUCUCUGUUGCUGUUCCUGGAUGAUUCUCUUCUGUUUCAUGGUCUGCAGUGCAUGGACAGUGUUUACAAGGUAGCCCUAUACUCCUAUAUUCAUCACAACAUAGUAGGUAGCGUGACUCCGCGCGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUAGACGGCAGACUCCGCGUGACGGCUGGAGGAGGCGAGGUCGGGCCUGCCCUCCAUCGACACUCCACGCCGCCGCAGCCCGCAGCCCCAUCAGCGCCGUCGCUCCAUCGCCGUCCCGACCUCGAAGGCGAACCGGUUUCGAGUCCCUCGCGCUGCCACUGAUCCCAGGGCUCCUCAACCCUGCAAGCCGUCGAUCCUGCCUGCGAACAAGUAUCGAGGGGGGUCUUGGCCGGAUCAGUUGCUCAUGGCCGGUAGGAGUGAGGAGUACACAGGCUUCCACACUACGAGGAAACUUCAAUGCUCGAGUUGUCGAGCUAGGUUGGGGAUAUUUGAUUCUUUAAUCUAUAUAGGGUUUGGUAGCGUGCACUCAGCCCUUAGGACUUAACAUGACAGUAAGUGAGAAAAAGGGAAAACAGUGAGUUUUUGCAUCAGGCUGGCUCAACUAAAUGAUUUUUAUGUCCCUUUGGUAAUGAAAAGAGAUUUUUCUGUUGUAUACCAUCUCAUAUGCUCUUAAGAUACAUUUUGAUUUACAUAACAAUUAUGUUUCUAUGUGAAAGAAACUAAAUAUAUAUUUGGUCAUUUUGGUAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

95

LEP:

19.31%

ME_num:

50

MEP:

10.16%

HE_num:

346

HEP:

70.33%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.89

Avg Expression:

105.26

Tip: OSA-LNC4345382 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.462665196530643.18552284016064e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.398788988106141.08662890355711e-06
3Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"-1.019948756310045.47553538366583e-05
4Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"-1.578399036383091.21362830529005e-12
5IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)-8.990759256071331.59484696943749e-09
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.443784356160151.95868507003684e-09