Chr:
Chr8
Start:
16237715
End:
16240077
Strand:
-
Ref_name:
LOC4345357
Sequence
(XR_003243664.1):
GACGGCCUGUUUUAGUGGCGUGCGACGGGCUCGGUGGGGCCAUCCACUGCCCGGAUCCGGCGGCGGCGGCCGUCCCUCGCCCGGCCCCGCACAGAUCCACUAGCGGCUGCGGGAGGAGAGCCCAAGGGCAGACUCGGCGAUGGCUGGUGGACGACUGUCGUGCACCGGGUGGAGUCCGGCGGCGGGCGGCGCAUCCGCUCACUUCUUUCUGCCCGCUGCCGUCAUCGUGGUUGUGCUCCACCAGCUCGCCGUGUGGCCGCCACCUUCUCCCCACACCGCCGCCGACGGACGUCGACUCCGACUCGGCCGCCGGGGGCAAGCCCACCCAGAUGGACCUCGAGGACUAGGUUUGACAGCUGGUUUCAUAUUUAAAGAUACCACUCAGUCAAAGUCUUGUGGUAAAUAUUUUGCAUUUGUAUUUUCUUCAUCAUUGAGUUCUCCCAGGAGCUUUUUCUACUUGAGAUUUAGCUCUUGUUCUGAAACUUUGGGAUCAACAGAGCAAUUUAAGUGGAAUUGUUCUCGUGAUUGUUGCCAGCCUAUCUAAAAUACAUUUUGUUUUCUGAACAGUACAGAUGCAUGAGCAGUACAUACUUCUGCGGCAGUAAACGCAGAUAUGUCCAUGAUGAAUUUUCGGGCUCUGAUUCAUUGAUAGCGCUAGUUAUAUCAGAACUUAUUUGAUGGACUAGCUGUUCACAUCUGAUGCAUUUGUUGCAUUUCUGGGCCUUUUGUAUUAUCAAUGAACAAAUAUGUUUGAAUGGAUUCCUCUUAUACAUGUGUCCUCAAUGAUUUUAUCUAGAGAUUUUAAGGAAAAAAUUGUUGUUAGGCUAGUAGUUUUCUGAAUUUUUCUGCUUCAACGGAGGAGGUCGAAUGAUGCCUGAAAUGCUGAACUUCUGUUUUUUUUAGUACUGCCACAUGAGCACUGAAAUUGUCUAGUUCAUUAGAGCAUUGUUGAUUGGUUAGUAUUUUUCUGAAAUUCCCUAGUUCUUGUAGAGCAGCACAAAUGAAUUUUCUUUGAUCCUUCACUCAAUCAGUUAGCCAUAUCCUUCACUGAAUCUGUAGAGCUGUUUUUUGUCAUCUCAUUUGUGUGGUUCUGUUAGUACUUUAAUUAAAUCGAAGUCAGGGCAUAUUCUCUAAUAAUUGUGGCUAGAUGUUCCUUUGCGCUGAACGUAUUGUUGUUGCUUAAACAUCAAGGUAUUCCUUAGUCUCCUUUGCUCUCUGACUAUGUAUUCCAGAUAAAUUUAGAGCUGCUAUGGCACUUGUGAAGAGUGACAUUGGUGGUAAUAUCACGAUAAGCAUCCUUUUUUCACGACACUUAAUAGUACAUUGUGUUUCAUUCCUCAUUUUCAUUAGUACAUUUCUGGUGUUAUCUAUGUGAUAGAUGCAUGAAUCAUAUUUACUUUAGUCAGAUUUGCUUACUUAGAAGUUUGUGAUAGAAGCGGCUCGGGUGAAAUUCAAGGAGGCGACAGGCUUGACGCGACGGGCAGCAUUGCACUAAGGGCUACCACGCCGAGCAUGUCGUCUGGAGGCCUUGUCGCUGACCCGAGUCCGGAAGGUCCUAUUGCUGGCCUCUUUGGUGAUUCCAGCUCUGCAUAUCGCCUGACGGUCAGGUCGGCGGAGGCAGGUGCCUUCCACCUGGUGCACGUUCGUGGGAACCACCUGAGAACAUCGUCAACAGUCUUCCUUUUGCAUGUCGACAUUGUUCUAUCGCCAGAGUCAAUUGUUUAAACUAGUAGUUUUGCUUCUGAGUAUUUUUUUUACUUCUAGAUUAACUGUGUAAUAUUUUACUGGUGGACAUAUGAUCCACUGUAAAGGUUCCUUGUAGUUUUCAGACUCACAAAGUCAAAUGAUCCGGUGAAAUUUUUUAUUAUAGAAUGUAAAAAUAUGCAUGGCAAAUAAAUGUAUUGUGAUGGUUGAUAAUUUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.63%
ME_num:
MEP:
7.72%
HE_num:
HEP:
65.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.59
Avg Expression:
23.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.28347514005544 | 2.33382538335182e-06 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.19858554695687 | 4.78025771463709e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.22071829068758 | 1.10806845490465e-09 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.61963077350066 | 1.51567636366576e-05 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.61970773830179 | 1.60766817643056e-05 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.61981811330163 | 1.52674822671433e-05 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.8888047049074 | 6.95803240770064e-05 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.76339671768621 | 1.76489897650402e-14 |