Chr:
Chr8
Start:
16145095
End:
16146288
Strand:
-
Ref_name:
LOC4345354
Sequence
(XR_001548154.2):
UGUCUUUGAAAUGGAGAGCACUAUAUAAACUGAUCCAAUACGUUAAUUCUUCUCCAACAAUAACAUCCUCUAAGCAUCAAUCAGAAGCAAAAGAUUUCACAGGCCUGACAAGAUCAAGAUGUCGUCGUACGGAUCAGGAUUCAUAACUCUGUGCCUCCCCAGCAGGGAACAACAUUCUAUGGAUCUUAUGGAGGAAAUAACUCGCAAUCAACAGCUUCAUCGUACCACAAUGGAUCAUCGAAAAGCACCACAGGAAGAGUGCCUGCGCAGCAAUAUUCAGAUUACAAGUCCAAGACUGCAGACCAGUUCUCCUACUACUAUAACAGCAUAAGCAGCGGCCAAGGCCAGCAGCUGGGAGGUGCUGGCUACUACGACAAGCAGCCAAGCAAGGGCACGACUAAGAGGUAUCCGUCACUCAAGGGCUGAUCUUAACUGAUUUGGCAGUGCUUGAUGCAUGAUCGAUGAAGAAUAAUCAACAGAUUGCAUAUACUCAUACAAGCACCGUAUAUACAAAUAGUCAUAUUGAGAGAGGAAGUCUGUGUGUUGUUGUGAAUCUUUCUGUAAACACAUGUUUGAGAGCAGCAACUUACCUAGAUAUGUAGGGUUGUUUAAUUUCUUCAUGUGGUUCAUUAGCCAUUAAAUAAGAUGUAUUACUGAUCGGUUAGUGAUCAGUUGUAUAUUGGGAAUAUCAAAAUAAUGAACCUUAUUUUGGGUUUAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.05%
ME_num:
MEP:
15.85%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.88
Avg Expression:
4.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.75428231709546 | 7.14691327335468e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.90637382548219 | 0.00612861945621087 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 7.05228079898661 | 3.6391581220194e-17 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 5.20630397853495 | 1.10886810661916e-12 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.82583915458438 | 0.0073298269742371 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 10.1692720321089 | 4.46952263721762e-17 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.79083719401349 | 0.000583942068074223 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.1110151070839 | 0.0201056190447954 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.76891344725341 | 3.57831120570934e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 7.38581645227265 | 3.39283948434126e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.65253265044011 | 0.00228139639947412 |