RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4345204

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

12043300

End:

12045888

Strand:

+

Ref_name:

LOC4345204

Sequence
(XR_001547965.2):

UUUUGAAAAAAUGAACAUCCCCCAUCGGCUUCCUCCUCCCAUGCCGUCCUCCCUUGCUCUCCCUGCCGCUUCCUCCUCCCCCUCCCUCCCCUGCUAUGAUGGCUCGCGGCCCGAGCCUCGCCGUGCCGCAACUGCCCGCGCACCGAUGCCUCUCGCUGGAUCUGGCAAGCUCGUCGGGGAAAGGGAGAAGGAGCCUGGGGAAACGGCGGCGGCGGCGGCGGCCGAAAGCAGGUGCGGUGGCAUGAGGUUGGAAAUCGAUGGGAUGCCACUAAUCUGGUCGCAGCGCAACACCCCAUUUGCGAGAUCAGAGCUUGAGGUUGACGGCGAGGUGGUUGAUCCCGGCUGAGGAAAUUGGGCGGUCCGGACAGAUGUGCAGAGGGUGAAGAUGCGGCAAUUAGGAGACCAACAGGGGCGAGACUGGUGGUGGGCAUCGUAUAUUAUUGGACAUGCACUUUAUAUACCACAUAUAUAUAGUUGUACACAGCAGGUUCUUUAUGAGUAUAGAUAAUGCAAUGAAUUGUCAGUCUAUAUAUGGCUAUAUCAAUUUGCUGAACUUUGCUGGAGAAGCUAUUUGCUGUGAUGUUUGAAACAUAGCUGAUCACCCAAAAAGUUGUCUUGCAAGCAUAAACUGGGCUGUUUAUGUAUGAAUAGUAUAUGCUUUGAAACUAUUUUGGUCAUUUUAUUUAUACUGCAAUAUAAUGUUAUUUGUAUUAGCGAUACAGUGUUAUGAAUUUAUGAUUGUUAUCAAUGAUAAUCUUUAAAAGAUAA

Sequence
(XR_001547966.2):

UCUUUUGAAAAAAUGAACAUCCCCCAUCGGCUUCCUCCUCCCAUGCCGUCCUCCCUUGCUCUCCCUGCCGCUUCCUCCUCCCCCUCCCUCCCCUGCUAUGAUGGCUCGCGGCCCGAGCCUCGCCGUGCCGCAACUGCCCGCGCACCGAUGCCUCUCGCUGGAUCUGGCAAGCUCGUCGGGGAAAGGGAGAAGGAGCCUGGGGAAACGGCGGCGGCGGCGGCGGCCGAAAGCAGGUGCGGUGGCAUGAGGUUGGAAAUCGAUGGGAUGCCACUAAUCUGGUCGCAGCGCAACACCCCAUUUGCGAGAUCAGAGCUUGAGGUUGACGGCGAGGUGGUUGAUCCCGGCUGAGGAAAUUGGGCGGUCCGGACAGAUGUGCAGAGCUUCAAAGGGUUUAGGUGAUAUGACCUGCUGGGAAAAAGAUGAAAUUUGUCACAAGCAAAUACCUAAGGUAAACUGUGAUGAUUUCUUUCUAUAGGAUGCAAAUUAGGGAGGUUCUGUUCAGGGAUACAAUUUUUUUUUUAACUACCGAUCCAGGCAAAACUAAUAUUGUUUGCCACCCUCUAUGGACAGGUAUUAAGUUGUGGUGCAGUCAGAUUUGUAGCUAAUCUGGGGAUGAGCGACAUUUUUCUGAAUCAGAUUCAUUCAUUGCAAUAUAAGCUUUAAAGGGCAAUAUAAGCAAUUUCGUGCUAGCUGAUGAUUAGAGGAUAGUAGCAAUGUAGUUUAAUUUCAGAAAGAAAAGGAGUGAUGCAUAGGGAGGAAAACCUUUUGUUCAAAACAAAAUUAUAUCAUUAGAUUUCUCAAGACCUUGCUGUUUUGUGUUUUGCUAUUCAUUGGCAUUUUAGCUUAAGGCCUAAUUUUUAUAACCCAACUAUGACCGACUUUGCAAUUUUGCAUUAGUUUUAUUGUUGCAACUAUAUUGGAUUUGGGUAAGUAAUCGCCAUUAUGUUACACUUUUGCUUGGAUUGGUUCUCAUGACCGGUGGCAAAGCAGGGUGAAGAUGCGGCAAUUAGGAGACCAACAGGGGCGAGACUGGUGGUGGGCAUCGUAUAUUAUUGGACAUGCACUUUAUAUACCACAUAUAUAUAGUUGUACACAGCAGGUUCUUUAUGAGUAUAGAUAAUGCAAUGAAUUGUCAGUCUAUAUAUGGCUAUAUCAAUUUGCUGAACUUUGCUGGAGAAGCUAUUUGCUGUGAUGUUUGAAACAUAGCUGAUCACCCAAAAAGUUGUCUUGCAAGCAUAAACUGGGCUGUUUAUGUAUGAAUAGUAUAUGCUUUGAAACUAUUUUGGUCAUUUUAUUUAUACUGCAAUAUAAUGUUAUUUGUAUUAGCGAUACAGUGUUAUGAAUUUAUGAUUGUUAUCAAUGAUAAUCUUUAAAAGAUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

93

LEP:

18.9%

ME_num:

86

MEP:

17.48%

HE_num:

312

HEP:

63.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.73

Avg Expression:

21.35

Tip: OSA-LNC4345204 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.284106380809535.9610796494443e-07