Chr:
Chr8
Start:
11588328
End:
11590944
Strand:
+
Ref_name:
LOC4345186
Sequence
(XR_001548342.2):
CUCACGAUCCUUCACCAGUCGUCGCCACGACGAGAUCGUUCCUCCCUCCUAUUCAGCCGCCACAUCUCCCAGCGAGGAGCUCGGGACCACCAGGUCCGGCGACCCCGUCCUCCUUACAGGCGGAUCCAGAAACCCGGAUGAGGAUGACAGCCGUUACCACCCUUUUCUCCUCUUUCAUCUUCACAUGUUAGAGGAUCCCUCUCCAUCUUCCUCAGCUCGCUGGCAUGGGAGUCGCACAUGAUAAGGGGUUUCACGGGAGCCGGCAGCGACCACUGCUUCUGUGAGAGGACCGAAGAUACCACCGCUCAAAAUAGUGCAUGGCUACCUCGAUCUUGGUUUUAAUGGCUGCUAACUGUCUUUUUCUGGUUUAUUCGAUGUGGAUGGCAUGGGCUUCAAACUAAUGGUUGUAUGUGUGUUUGUGUUUCUUGCUUUUCCCCCUCCCAAUUAGCCAAGUGAGACCUAUUGUUUCCCCUACAUUUGGAUAUAGCUUCUCAUAUAUUUCUUCCUGCGGUUAGAGGAAAUAGGAUGCAGACAACUGAGCAGAUUUUCUCCACCAUGUUAUAUCUGAAGAGGCAAAUAGGUCUGUACAUGAUCUCUGCAGGUUAUCGACUCUGGGAAUACCAACUCAAGUUUGCUUGCCAACAGCAUUGUGGAACAAAAUACUAUAUUUAUCUGUAUAUGUUCAUUGACUUAUUUUUUCCUUGAAUUUCAGUUAUGCUUAUUCAUUACAAAAAUGUUUGCAUCUCCCUUUUCUCUACCGAAUAGGCACAUUUAAAUAAACCAUAUCUACCAUUGAUCCAUGAUGGAAAUAAUGUAUUGAAAGUUCAUUUUGUACGCUGCAUUUUUUGUUGUUUAAAGGUUAUAAAUUUCAUUACAUUAAUCAUUAUCUUGCACUAAUAUGUUGCAGAAAAAUAUCCGUUGUUGAGAAGAUUUAACACAGGGUCUUAUUCCAAGAGGUGUGUUCUGCUGCUGUCAGAAGAAGUAUUGCCGAUUUAUAAGAAUUGACUUCUCAUACAUUCCAUCUUAAUUUCAUAUUGAGUAGAUCGUUGCCAAUGAGCGUGCUAUUAAAUUGGAGUACUCAAAGUAAGUUUAAUAAGCCUCCAGUUUUAUUUUUUCCUAUCUAUGCGUAUGAUGUGGCAAUGUUUCAUUUGGCCUAAAUAAAGAGAAGGUAGACAGUGAUCCAGUUGGACAUGGAUAAUGGAAAAUCAAGCUUAAUUAGUUACAAUCACAUAAGCUUAGCCAAAAAGUUGUGGUUAUUUGAUUGAAUCAAUUAAUUGACCAAACUAAGGCUUAUAAGGAGCACACCAACCACAUAUACUAUAACUUAAUUUUAGUACAGCAGGACCCACAACUCACCUGUACCAUACCAUUUAGAUAUGUCGGUUAUCCUAAAUAUAAAAUGUAUCCUAAAUAUAAAAUGAGGUCUUAAUUCCUUUAUUAUGUGCAACAGCUAUUUGAUUCAACAAUGCUUCCAUUUGAUCACAACCAAUUGAAGUAGCUUAUGUGGAUAUUUCCUAUGGCACAGAAUCCUAAUGUUAGUGUUUGAAGAGGAAAAAACCAAUUUAACUCUUUACCUACCGAAAUUAGUAAAGGCAACUGGUAUGGUCACUCUACAAAAAGUCAGUCCGUUUUAUUGCAUUUCACAAUUCAACUACACCUAAAAUAGCUGAGCCAACCAUUUACAUAGUUACCCAUCCAUAUUAUCGAUUAAUGUUAGAUUUAGUUGAUUUCAACUUACAAAGGAUGAAUUUAUCAUUUGGUAAUAAUUAGUUCUUGGGCGAAGUUCCCAAACAACCGGUGUAAUCGGGUUCUAUUCUUUCCUGUUCACGUUCUCAUAAGGUGGUUACACCAUUAUGCCAUGUUAUGCCUCCAUGCUAUGCAUCUUCCUGGUACGUGGAUCAACUAAAACAACUAUUGGUUCCUACAUUUGAUUUAAUCUUUGUAUAAAUAGCUUGAUUUGCAUAUCCAAUGGGUUUUUUGUUGGAUGUUAACUUGCACAAAAGAAAAAUUAUAUUUAUUCACUGACUGACUGGUUGCUCUGUUGAGUUCCCUAUCUUUUGUUGACUAUAUUGCUAACUGGUGCCUUUUUAGUAGGUCUAUAUUUUCUUUGCUUACACAGUAAACCCUGCACCGCACUUAUCUAUCCCUUCUUCCUAUUGACAAUAUCCUUGAUCUAAUUGGGGUUGUCGAUGAUAUAUUUGUGUACUGAAUGGUAUGGCAGAUCAUGCUUUGAUAAAUGAUGCUGGCACAAUGAAAAGGAUAAUAGAGCUAAACCUUUUGGUUCUUACGGUGCCCUGGUCAUGGCUAAAUAAGGGAGUUGGACACACAUGUUCAUUCUGCCUAUUCUAACACCAAUGUAAUUGGAAAUCGACUUUGAUUUAAUACAUCUAUGUGCAUAAAUAUAUUAUGUACAUGAUUUUUUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.58%
ME_num:
MEP:
12.8%
HE_num:
HEP:
63.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.62
Avg Expression:
16.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.6613351457447 | 1.26787052248021e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.04021778392732 | 1.44612366592381e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.28743434258664 | 2.09626983525338e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.39285434195092 | 1.18584159254352e-32 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.13806512470719 | 3.14729264965336e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.79822217440333 | 2.3758461886256e-49 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.04083695412569 | 0.000840461739275092 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.49367227916571 | 4.47081615055113e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.60502422870901 | 4.3040019037656e-32 |