Chr:
Chr8
Start:
11399709
End:
11402887
Strand:
-
Ref_name:
LOC4345175
Sequence
(XR_001547866.2):
CGCCUCACCCAGCCCCUCCUCCGCGACCCUCCCCCUCCUCACCUCCCCUCGCGCGUGUCGGCGCCGCCGCCGCCGCCGUCGCAUCUGCCGGCGGCGGCCCUAGCCUCCUCCCCGACGGAUCUGCCGACUCGAAGGAGAGAGAAGCGAGUCACCGCCGCCUCUUCUUCUCUUUCAUAGUUUUAUCUCCGCCUCACCACCGCCUCACCGCCUCUUCCCUCACGCAUGCCGCCGUCGCAAUCUCACACUCCUCCAACCCUCAACGAAGCGCUUCCGCCACAGCCCUCAAUUUUCGUCGCCGCAUCUGCUAGCAAAGAUCCAGGCGCCUGGAGAAGAGGAACACGAGCUACCACCACCUUCUUCCCUUCAUCUGCCAGUGAGGAUGGUCGCAUCUUGGUGAGGAUGGCGGCAACGCGCCGGCGCGUGAGUCCCCCACAGCGUCCUCCAACUUUUUUUCUCUAUAGCGGUGCGCUCCCUCCCCCUCGCAUCAGUAAUUUUCUUUUUCUAUGGCAAUGUAUGCAUGGAAAAUCUCAUCACAUUUACAACAGGUAACUUUCCCCAUCUAAUUUUCUCUCAUCUUGCUGGAUUUUAUUUUUUUGGAUCGAUCCCCCUAUUUUUGUUGCAGCAAUACUGGUUCGAAGCAAGCUCAACUAUUUAAUGGCAAUAUAUUUGUCGGUACUCCACUACAUAGGUUGCUUCGAUUUUAUUUCUACAAGAUGCAGGUAAUAAGUGCGUGUGUUUCUGCUUUUGUUAGUUCAGGCGUACUGCCCAUGUUCAUCCGAUUGCUGUCCUAAUCGUUCGUGCAUUCAUUAUAGUAAUCAAACAGUUGGAGUUAGCAUGUAUGUCUUAAUCUGCUCAAGAAACUUCUUGCAACCCCCAAGUUUUCCCCCAAAUCGAAGUCUGCAGUUGACUGCAUACAAUUUAGAUUCUCUAUUUCUAUUUCAUCGACUUAUACAUCCAUCAACAUUUUGUUUGUUAGAAUGCCCUCUUGAAGUACUGCCCAUGUUCAUCCGAUUGAUGUCCUAAUCGUUCGUGCAUUCAUUAUAGUAAUCAAAUAGUUGGAGUUAGCAUGUAUGUCUUAAUCUGCUCAAGAAACUUCUUGCAACCCCCAAGUUUUCCCCCAAAUCAAAGUCUGCAGUUGACUGCAUACAAUUCAGAUUCUCUAUUUCUAUUUCAUGGACUUAUACAUCCAUCAACAUUUUGUUUGUUAGAAUGCCCUCUUGAUGUUUUGAUAUGGAGGAGUUUUCAGACGGAGAAGAACAAGCUGCUUGGCAGCCCAUACGCAUGUGUGGCUGUGCAAAUGCAGCCUGCGAUGGAGUGCCACAACGAGCUCCGCUAAGUUACUUUGCUAGGCCAUCCUUGCGAUGGCAGCUUGGCGCGGCCAGGGAUUCCAGCAGCCCAUGGUGGUGUUCAAAAUGAGCAGAUGGUUCAUCUCUACCACUUGCAGUCUGAUUCUACAGUAUUUCCUAACCAUGGCUAUGAAUGUUUUUUUAUGAAGAAAAAAUCCCAUGUCAAACAUACCUCAAAUCUCAAGUUACAUAUGACCAGUGUUGAUGUCAUACUGACUCUCAAGUCGAUUUUGACACAUCUUGAAUUGAACCAAUCCAAACAAAUAGAUUUAUUUUUACCUUUCUGCUUUGUCAUGAUUUGGUCGACAUAUUCAGUCCAGAUAUUACAGUGAUAUCUCUGUUCUUCAGCAAAGCGAGAGAAAUCUGCAGCAUGUCUGAAUUGUAAUAAUUGUAUGUACAUGAAAGAUGCAAGUUUAAAUUUAUUUAGUUUUUAUAUAAGGCGGUCAUUUUAGAUCAA
Sequence
(XR_001547867.2):
GCCUCACCCAGCCCCUCCUCCGCGACCCUCCCCCUCCUCACCUCCCCUCGCGCGUGUCGGCGCCGCCGCCGCCGCCGUCGCAUCUGCCGGCGGCGGCCCUAGCCUCCUCCCCGACGGAUCUGCCGACUCGAAGGAGAGAGAAGCGAGUCACCGCCGCCUCUUCUUCUCUUUCAUAGUUUUAUCUCCGCCUCACCACCGCCUCACCGCCUCUUCCCUCACGCAUGCCGCCGUCGCAAUCUCACACUCCUCCAACCCUCAACGAAGCGCUUCCGCCACAGCCCUCAAUUUUCGUCGCCGCAUCUGCUAGCAAAGAUCCAGGCGCCUGGAGAAGAGGAACACGAGCUACCACCACCUUCUUCCCUUCAUCUGCCAGUGAGGAUGGUCGCAUCUUGGUGAGGAUGGCGGCAACGCGCCGGCGCGUGAGUCCCCCACAGCGUCCUCCAACUUUUUUUCUCUAUAGCGGUGCGCUCCCUCCCCCUCGCAUCAGUAAUUUUCUUUUUCUAUGGCAAUGUAUGCAUGGAAAAUCUCAUCACAUUUACAACAGGUAACUUUCCCCAUCUAAUUUUCUCUCAUCUUGCUGGAUUUUAUUUUUUUGGAUCGAUCCCCCUAUUUUUGUUGCAGCAAUACUGGUUCGAAGCAAGCUCAACUAUUUAAUGGCAAUAUAUUUGUCGGUACUCCACUACAUAGGUUGCUUCGAUUUUAUUUCUACAAGAUGCAGAAUGCCCUCUUGAUGUUUUGAUAUGGAGGAGUUUUCAGACGGAGAAGAACAAGCUGCUUGGCAGCCCAUACGCAUGUGUGGCUGUGCAAAUGCAGCCUGCGAUGGAGUGCCACAACGAGCUCCGCUAAGUUACUUUGCUAGGCCAUCCUUGCGAUGGCAGCUUGGCGCGGCCAGGGAUUCCAGCAGCCCAUGGUGGUGUUCAAAAUGAGCAGAUGGUUCAUCUCUACCACUUGCAGUCUGAUUCUACAGUAUUUCCUAACCAUGGCUAUGAAUGUUUUUUUAUGAAGAAAAAAUCCCAUGUCAAACAUACCUCAAAUCUCAAGUUACAUAUGACCAGUGUUGAUGUCAUACUGACUCUCAAGUCGAUUUUGACACAUCUUGAAUUGAACCAAUCCAAACAAAUAGAUUUAUUUUUACCUUUCUGCUUUGUCAUGAUUUGGUCGACAUAUUCAGUCCAGAUAUUACAGUGAUAUCUCUGUUCUUCAGCAAAGCGAGAGAAAUCUGCAGCAUGUCUGAAUUGUAAUAAUUGUAUGUACAUGAAAGAUGCAAGUUUAAAUUUAUUUAGUUUUUAUAUAAGGCGGUCAUUUUAGAUCAA
Sequence
(XR_003238281.1):
UAGCCGCCUCACCCAGCCCCUCCUCCGCGACCCUCCCCCUCCUCACCUCCCCUCGCGCGUGUCGGCGCCGCCGCCGCCGCCGUCGCAUCUGCCGGCGGCGGCCCUAGCCUCCUCCCCGACGGAUCUGCCGACUCGAAGGAGAGAGAAGCGAGUCACCGCCGCCUCUUCUUCUCUUUCAUAGUUUUAUCUCCGCCUCACCACCGCCUCACCGCCUCUUCCCUCACGCAUGCCGCCGUCGCAAUCUCACACUCCUCCAACCCUCAACGAAGCGCUUCCGCCACAGCCCUCAAUUUUCGUCGCCGCAUCUGCUAGCAAAGAUCCAGGCGCCUGGAGAAGAGGAACACGAGCUACCACCACCUUCUUCCCUUCAUCUGCCAGUGAGGAUGGUCGCAUCUUGGUGAGGAUGGCGGCAACGCGCCGGCGCGUGAGUCCCCCACAGCGUCCUCCAACUUUUUUUCUCUAUAGCGCAAUACUGGUUCGAAGCAAGCUCAACUAUUUAAUGGCAAUAUAUUUGUCGGUACUCCACUACAUAGGUUGCUUCGAUUUUAUUUCUACAAGAUGCAGGUAAUAAGUGCGUGUGUUUCUGCUUUUGUUAGUUCAGGCGUACUGCCCAUGUUCAUCCGAUUGCUGUCCUAAUCGUUCGUGCAUUCAUUAUAGUAAUCAAACAGUUGGAGUUAGCAUGUAUGUCUUAAUCUGCUCAAGAAACUUCUUGCAACCCCCAAGUUUUCCCCCAAAUCGAAGUCUGCAGUUGACUGCAUACAAUUUAGAUUCUCUAUUUCUAUUUCAUCGACUUAUACAUCCAUCAACAUUUUGUUUGUUAGAAUGCCCUCUUGAAGUACUGCCCAUGUUCAUCCGAUUGAUGUCCUAAUCGUUCGUGCAUUCAUUAUAGUAAUCAAAUAGUUGGAGUUAGCAUGUAUGUCUUAAUCUGCUCAAGAAACUUCUUGCAACCCCCAAGUUUUCCCCCAAAUCAAAGUCUGCAGUUGACUGCAUACAAUUCAGAUUCUCUAUUUCUAUUUCAUGGACUUAUACAUCCAUCAACAUUUUGUUUGUUAGAAUGCCCUCUUGAUGUUUUGAUAUGGAGGAGUUUUCAGACGGAGAAGAACAAGCUGCUUGGCAGCCCAUACGCAUGUGUGGCUGUGCAAAUGCAGCCUGCGAUGGAGUGCCACAACGAGCUCCGCUAAGUUACUUUGCUAGGCCAUCCUUGCGAUGGCAGCUUGGCGCGGCCAGGGAUUCCAGCAGCCCAUGGUGGUGUUCAAAAUGAGCAGAUGGUUCAUCUCUACCACUUGCAGUCUGAUUCUACAGUAUUUCCUAACCAUGGCUAUGAAUGUUUUUUUAUGAAGAAAAAAUCCCAUGUCAAACAUACCUCAAAUCUCAAGUUACAUAUGACCAGUGUUGAUGUCAUACUGACUCUCAAGUCGAUUUUGACACAUCUUGAAUUGAACCAAUCCAAACAAAUAGAUUUAUUUUUACCUUUCUGCUUUGUCAUGAUUUGGUCGACAUAUUCAGUCCAGAUAUUACAGUGAUAUCUCUGUUCUUCAGCAAAGCGAGAGAAAUCUGCAGCAUGUCUGAAUUGUAAUAAUUGUAUGUACAUGAAAGAUGCAAGUUUAAAUUUAUUUAGUUUUUAUAUAAGGCGGUCAUUUUAGAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.32%
ME_num:
MEP:
1.42%
HE_num:
HEP:
91.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.52
Avg Expression:
60.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.95565400003585 | 9.2094209713252e-19 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.44264818686448 | 1.24759660497868e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.15589827990739 | 3.83573330900216e-11 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.08763392444596 | 4.41053600694648e-05 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -10.2859425423098 | 2.27198862346986e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.15306416611761 | 3.25686104175078e-14 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.58289999576689 | 3.85015325544319e-20 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.00237274286018 | 6.94399524949818e-16 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.57149665997184 | 5.9812727867639e-17 |