Chr:
Chr8
Start:
10410478
End:
10411693
Strand:
+
Ref_name:
LOC4345142
Sequence
(XR_001548064.1):
GUAUUAUUUUACCUGUUUUAUUGAUAGGACAAUUUUUUUUCAGGGUUUCUAUUACUCUCUAAGGACAGCCAUAUAUCUUUGAGAAUAUUGAUUUUAUCCCCUUAUUUGAGCCAUAUACAGAGACUGACUUCUUUGUUAUGUUUGUUUUGACGGAUUUUGGCUGUUACUGUUGUGCGUGUUGUAGUCUGGAUGGAGACUGGCGGCCAUGGACGUUGACAACCGCUUUAAUAGAAUCAUGAUCGCCGAUGCCAACUACCAGGACUCCUUGCCCCUGUGCCCCCUUCUCUACUGCGACACCACAAAGUGAUCUCCGGAACCCUCUCCACUGCACGACAGAGAAGGUAAUACUAUUCAAGUACAAAUGUAGAUUUGCUGGUAAAUAGUGGAUGUGAUUGUGAACUAUAGUGUCACAUAUCUAUUACGUGUAUAUGUGCAUAUCCACAUAUUAAGGAGCUGCUUAUAAGUCAUGGUAUGCAAGUUUUUUCUGUAAUUUGAAUGCAUGGAUGCUAUUUAAAAUCUCAAUUUGAUGUGACAAAAUAUCACCGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.14%
ME_num:
MEP:
70.33%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.67
Avg Expression:
5.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.111065920907 | 0.0267455165175377 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.92934826459841 | 0.00126938336436447 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.37119068168706 | 0.0300971160240507 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.96782166041746 | 0.00306012782013733 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.03095427762236 | 0.00205777001146414 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.51612930892442 | 0.0134109617154345 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.38763141444767 | 0.00684568454568336 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.15811892882607 | 0.000600718794209703 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.38758903296891 | 0.00699030815622843 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.28656419178664 | 0.0250690108022881 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.30037418541578 | 0.00631836283976914 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.305648757129 | 0.0129882519089445 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.39224128998724 | 0.00559654747974557 |