Chr:
Chr8
Start:
8159952
End:
8162781
Strand:
-
Ref_name:
LOC4345011
Sequence
(XR_001548290.2):
AUAGUAGUAUACCUGAGUCAUCGAUGGGAGCUAGGCUCGAUGUCUCCUCCUUCCCGACUCUCUCCACUCUCCCCGACGCCGCCGCUUCCCGAAGACCGGCGGCGAGCUGCCAGCUGGGGAUGCGCCCUCUCUGCUGCCGGAGAAUCUGGAUCCGGCCGGCAUCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGAUCGACGGCGCCGUCGACGUGGGGUGGAGAGCAGGGGUACCAUUUGAAGUGCAAGUUACAAGUUGAGAGGGCCAUGGUUACAGAUGCAUGUCACCUCACCAUUGCAUGUGGAGGCUUGAUCUGCUAGGAACUUUGGCUGGCUGAAGAAACAAAAAAUAAUCUUAUUUGCUUUUACAUGCUCGUUUGUUACCGCAUGGAGCAAACUAUCUCAAAAUGUUCUUUUGUCCAAAAACUUUGCUUCGGCACAAGAUUUGUACAUGCUAUGUAAAGUAUUUUUGCAGGUAUUUGCCCUGUCAAGCUGAUGAUGUCUCAGUUGUCAAUGUGAACAAUCAAUACUUUUCAAUACAACACCGUUAGUCACGGCAAACAGUAUUUGUACAUGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.23%
ME_num:
MEP:
12.8%
HE_num:
HEP:
72.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.54
Avg Expression:
27.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.15068300338819 | 2.51293221876897e-05 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.76738933555524 | 3.78432606492249e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.23700099169482 | 7.32693717079666e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.88201370955923 | 6.76486714514927e-18 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.40534590272362 | 6.14990896296135e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.69390720903096 | 2.17187599043841e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.34772695451108 | 1.31029851557024e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.12535909791224 | 6.46650921032911e-06 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.10361676823312 | 4.41593914528272e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.51858786388038 | 2.83143131466341e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.52036643867035 | 3.70309537383072e-12 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.12429412968817 | 0.000679160087864755 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.26741966776183 | 1.76218751807679e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.3835272980188 | 6.73211184098115e-11 |