RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4344597

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

1828158

End:

1831256

Strand:

+

Ref_name:

LOC4344597

Sequence
(XR_001548116.2):

CCCUCGGGUUCCACUUUUUGUUUUCUUUUUUGUCGUAUAGUACUCCUCCUCCUAAGAGAGAGAGUUAGAGAGCGAGAGAGACACACACACACAUAGAGAGUUCCAAAGUACCAAACCCUCGCCGCCGGGGAUGUCGCCGUCGACGCCCCACCCGGGCCGCGCGCCGGCUGGCCGUUCUCCGGGACUCUUGGGCACUUACCUCCAUCCAGCUCCAGCCUCUCGCGCAGCCGUCCAUUCAUUCAACGCCAGUAUGAGAAAGAAGAAGAUAAUUUCUGGAUGGGCCAAAGCUAAUUGAGAUGGUGACGACCGAGGUGUUUCUACCAUGAAAGUUCCAACCAUGAAGAGGGUAGAAACCUCAAGUGCCAUGAAUGGAAGUUCGAGCUGAAAUGGGAAGUGAUAUGUCUAACUGACAAUAGGACUGCCCUAGGCACUAAAGGGCAAGGAACAAGGGAGUAGUACAUGGAAUGUUUGUGUUGAAUAAGGAGGUGUUUGGGUGAGAGGGACUAAAUAAGUCCCUCCCUAGGCACUACUCCAAGGAAGUUGGAACUAGUAACUAUAUCCACAGCUGUAUAUGGAAAGUCUUUGGUCUCUGCAGAGGACCAAAAUCUGUACAAGGAUUGUGUGGGUGGGGGUUCAGUUUAGUCUCUCUCCCUCUCUCUUUUUUGUUUUUCAGUUUUUGAACAGGAGUUUUAAGCCCUGUUUGGCAAAUGCUCUCUGUUUUAACUGCUAUGCAAGCCAUUUUCAUGCCUGUUGUGCAGCUUCAGGUUUUCACUGUUUUAUUGUUCAGGAUUUAUGUAGACAACCUCCUGAGAAAGUGUAAAAUGUUGUCACUUAA

Sequence
(XR_003243735.1):

CCUCCCUCGGGUUCCACUUUUUGUUUUCUUUUUUGUCGUAUAGUACUCCUCCUCCUAAGAGAGAGAGUUAGAGAGCGAGAGAGACACACACACACAUAGAGAGUUCCAAAGUACCAAACCCUCGCCGCCGGGGAUGUCGCCGUCGACGCCCCACCCGGGCCGCGCGCCGGCUGGCCGUUCUCCGGGACUCUUGGGCACUUACCUCCAUCCAGCUCCAGCCUCUCGCGCAGCCGUCCAUUCAUUCAACGCCAGUAUGUGAGAGAAAGAAGAAGAUAAUUUCUGGAUGGGCCAAAGCUAAUUGAGAUGGUGACGACCGAGGUGUUUCUACCAUGAAAGUUCCAACCAUGAAGAGGGUAGAAACCUCAAGUGCCAUGAAUGGAAGUUCGAGCUGAAAUGGGAAGUGAUAUGUCUAACUGACAAUAGGACUGCCCUAGGCACUAAAGGGCAAGGAACAAGGGAGUAGUACAUGGAAUGUUUGUGUUGAAUAAGGAGGUGUUUGGGUGAGAGGGACUAAAUAAGUCCCUCCCUAGGCACUACUCCAAGGAAGUUGGAACUAGUAACUAUAUCCACAGCUGUAUAUGGAAAGUCUUUGGUCUCUGCAGAGGACCAAAAUCUGUACAAGGAUUGUGUGGGUGGGGGUUCAGUUUAGUCUCUCUCCCUCUCUCUUUUUUGUUUUUCAGUUUUUGAACAGGAGUUUUAAGCCCUGUUUGGCAAAUGCUCUCUGUUUUAACUGCUAUGCAAGCCAUUUUCAUGCCUGUUGUGCAGCUUCAGGUUUUCACUGUUUUAUUGUUCAGGAUUUAUGUAGACAACCUCCUGAGAAAGUGUAAAAUGUUGUCACUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

282

LEP:

57.32%

ME_num:

157

MEP:

31.91%

HE_num:

52

HEP:

10.57%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.81

Avg Expression:

8.21

Tip: OSA-LNC4344597 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.906242371547540.026912239016241
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.879330810488970.0152373930468536