Chr:
Chr7
Start:
23438338
End:
23441874
Strand:
-
Ref_name:
LOC4343717
Sequence
(XR_001547356.1):
UUUUAACGGUUGAGGGAGCCUUUACCUUUACCCAAUUUUACACCCUGUUUUGCAGUGGAGGGACACGAAUCAAACGUGCCUAUAGUCGAGGGAGUCUAGAUGGACUUUUUCCUAAUAAUCUGGCGCGAAUCAUAAAUGGUGAGAACUCGGGUAGAUUGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCUAAUCCCCAAAUUCGCUAUCUCUUGGCUCUGCCAUCGAAAUUCGAAACCCGCAUAGCUUUGGAGCAAGCCGAAUCUGCAACCAAUCCAUCAGAUUGGAGGGCGAGGCGCAGGGAAGGCGAUCGAUCGACCGAAGCCAUGCCCACCACCGCAGAGGAUCAGAAACAGUGGAAGGUGGUGGAAGUCCAGCGGAUCAAUGCGGAGUCCCAUCCCCCUCCUCGGCGUGACGAUAGGUGUGACGACCUCCGCAACGACGAGGAGUUCCAGCGUGUCAUGGACAACGUCGUCUUCGGCCGGGGUUAUGAUCCCACAAGAGAUGACCUCAGGAUCAGCACUGACCCUACUGCGAUGGUCGAGCUCAUAGAGUACUACCACAAGAUGGGUCUGAUAGAAGGUGAAUGGGUGGCUUAGAGCUUCUUGGAGGGGGUGGAUGGGGUGGAAUUGGAGGAUAAGACGGCGAUGGAUGAGAAGCCAGUGAUAGAGGAGGAUGAUCCACUGGUAGAGAAAGGGUUUUUCCUCCCGGUUAGUAACCCCCUAUACUUCCGGUUUUGCAAUCGGGAGUAGCAAUCCGGGACUAAAGAUACUCAUCUUUAGUCCCGGGUGAAAUAACCGGGACUAAAAAUGUAUCUUUAGUCCCGGUUCGUAUCACCAACCAGGAUUAAAAAUGGCGAUGGCAGCGCCAGUCCCGGUUAGCAACUGGGAUUAAAGAUGGCGAUGGCAGCGCCAGUCCUGGUUAGCCACUGUUUUUUUUCAUUAUUUUUUCCCAAAUCGAGUUGGAACUACACAAAUCUCUUCCCAAAUCAAGUUGCUCCCUUUAUCCCCAAAUCAAAAUCAAAGUAUCAUCACAAACAUAGAUUCACAUCAUAAAUUCUCAAGAAAAAAUACAUCAAGAAGAGUUGGAACUGCACAAAUCUCUUCCCAAAUCAAGUUGCUCCCUGUAUCCCCAAAUCAAAAUCAAAAAUAUCAUCACAAACAUAGAUUCACAUCACAAAUUCUCAAGAAAAAAUACAUCAAGAAAUACAUCAUGUUUGUACAUCACAUAAUGAAUCACAACUUCUAAAAAUUCUCAGAUCCAAUGAAUCACAACUUCUAAAAAAUUCUCAGAUCCAUCACAAAUUCUUAAAAAAAAAAUCAAGUUGCUGCCGGCCGGCAGCCGCGCGCCACGCUGCUGCCCGCCACCCGCUAGCGCGGCCACGCCGCCUCCCUCCCAUCCGCCGCCGCCCGCCCACCCUCCGCGCGGCCCGCCGUGCCAGCCGCCACCGCCCGGACUCGGCCGCCUGGAGAGGAUGAGGUAGGGAGGGGUAGGAGAGGUGAAGGGGGAGGAAGAAGGAGAGAGAUGGGAGACUUCUGAGAUGGAGAUCUCUAGAGAGGCCGGCUGUUAAUUUAAUGCAAAGAGGGGAGAGGAAGGGAGAGGGGGAUAAGAUCAAUGACGACGACUGUGGACUGAUACAGAGGCGGGCGGCUCGGGGUGAAGUUUAGUCCCGGUUAGUAUAAACAACCGGGAUUUUUAGUCCCAGUUAUUUAUACCAACCGGGACUAAAGAUAAUUGGGGCCCUGACUCGUCCUGACAAUUUUUUGAACCGGGAUUAAAAAUGAUCUUUAGUCCCGGUUCGAAUAGGAACCGGGAUUAUUGUGGAUUUUGGACGACCGACCAAAAAUGGUUUCUCUACCAGUGAUCCUGUAGUUGACUGCGAAGGUAGAGACGACGCCACCCCUGAUCGCGCUGAUGAGCAGGUGAAGAAACAGUGCUUGAUGAGCCUCGAGCUGGAUAUCAACCGUGACCAGGGUGCCUCAUCAACUCUUGAAGUUGCUCAAAGAGGACUGGCAAUUGGCACCUGAAUCUCCAGAUGGAUGUGAAAUUUGGUAAUGUCUAUAUCAAACCGUGACUCCUCGAGUCUAUCGUAUUAGCAUAAAAAUAUAUAUAUGUAGAGUAUAUAUAUCUUGUCUGGGAUGCUAAUUGAGAUCGAUGUUGAGAACCAUGUAUAAUCAAUCAUUAUAAAAAUAUAUGUAUGUGCUGUUGAAUGUA
Sequence
(XR_001547357.2):
UUUUAACGGUUGAGGGAGCCUUUACCUUUACCCAAUUUUACACCCUGUUUUGCAGUGGAGGGACACGAAUCAAACGUGCCUAUAGUCGAGGGAGUCUAGAUGGACUUUUUCCUAAUAAUCUGGCGCGAAUCAUAAAUGGUGAGAACUCGGGUAGAUUGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCUAAUCCCCAAAUUCGCUAUCUCUUGGCUCUGCCAUCGAAAUUCGAAACCCGCAUAGCUUUGGAGCAAGCCGAAUCUGCAACCAAUCCAUCAGAUUGGAGGGCGAGGCGCAGGGAAGGCGAUCGAUCGACCGAAGCCAUGCCCACCACCGCAGAGGAUCAGAAACAGUGGAAGGUGGUGGAAGUCCAGCGGAUCAAUGCGGAGUCCCAUCCCCCUCCUCGGCGUGACGAUAGGUGUGACGACCUCCGCAACGACGAGGAGUUCCAGCGUGUCAUGGACAACGUCGUCUUCGGCCGGGGUUAUGAUCCCACAAGAGAUGACCUCAGGAUCAGCACUGACCCUACUGCGAUGGUCGAGCUCAUAGAGUACUACCACAAGAUGGGUCUGAUAGAAGGUGAAUGGGUGGCUUAGAGCUUCUUGGAGGGGGUGGAUGGGGUGGAAUUGGAGGAUAAGACGGCGAUGGAUGAGAAGCCAGUGAUAGAGGAGGAUGAUCCACUGGUAGAGAAAGGGUUUUUCCUCCCGAAGUUGCUCAAAGAGGACUGGCAAUUGGCACCUGAAUCUCCAGAUGGAUGUGAAAUUUGGUAAUGUCUAUAUCAAACCGUGACUCCUCGAGUCUAUCGUAUUAGCAUAAAAAUAUAUAUAUGUAGAGUAUAUAUAUCUUGUCUGGGAUGCUAAUUGAGAUCGAUGUUGAGAACCAUGUAUAAUCAAUCAUUAUAAAAAUAUAUGUAUGUGCUGUUGAAUGUAUUUUGCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.56%
ME_num:
MEP:
46.95%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.81
Avg Expression:
5.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.7852903610599 | 3.63318860328447e-06 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.41398549907391 | 0.0095417032940898 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.03001272249317 | 0.027610606596365 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.568597692515 | 0.0141566512590544 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.26287444215829 | 0.0186673483791659 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.35092385321202 | 0.00132638551611633 |