Chr:
Chr7
Start:
20944285
End:
20947051
Strand:
-
Ref_name:
LOC4343465
Sequence
(XR_003243265.1):
CAGAUGGUGCUGGGCAGGAGAUGAAGAGAACUAGGAGAGACAAUAGCAGCAUACUGCAGUAACUAGAGAGCAAUGGAAAAGCUUUGCUUGUGGAUCGUCAUGGAUGAGUUCCAAAUACCAUCUUGGUUUUGUCUACCAAGAGAGUUGUAGUUAGACUUUUCCUUGAAAUAGGAUUUGGCAGAUGGUGAUGUUUCAAGGAGGGAUAGCUCCAGAAACAGCGAUUAUUCGAUCUGGGAACCUGACAUUCACUUUCCUCCAUCAUCGGCUGUGGACUUCCUCUAUACAGGGGAUGUCAUCGCUGCUAAGCAUAGCAACAACAUCAGACAUGGUGGGGCGCUCCGCUGAUUUCUCUUGAACACACAUUAGUGCCACCACAAGACAUUUCAUCAUUUCUCCAGAUAUUCGUAGAUCAGUAUCUUCUGUUCCUCAUGAACACAGCAACCGAGCAACCUAACAAGGUUUUUGUGCUGAAGUUUUGCUACAAGCUGGAUCUCAUUUUUGAACUCCACUAGACCUUGUCUUGACUGUGCACCAAGUUUUUUUAUUGCUAACUCUUGUCCAUCAGGAAACAGCCCCUGUAAAUUUCAUCAAUGAAAUCCUACAUACAUAUGAUGCCAUCAGAAUUAGAUGAUACUGUUACAAGAAAGUACCUUGUAAACUGGGCCAAAGCCACCCUCGCCUAAUAUGUUAUUGGCUGAGAAGUUGUCUGUAGCAUCAGCAAGCUGGGAAAAAUCAUACAAGGAGAACUCUGAACCAGCAUCUUCUAUCUUCCAAAGCCGCAUAACUUCAUCCAUGUCUGUGGUCUGCUCCAUCAAGUUUAUUUUCACUAGAUGCACAUCCUUCAUUAGUUCUUGCAUGUAACUGAAGAAACAGAAAAACAGGCGUGUGCAGAUGAUGGAAAGAGAGUAAACAGUAGCAAUGAUCAAGAUUGCAUGUCCCUUCUUUUGCCCUGAAUUUUGAAACAUAGAAUGGUUUACAUGUAGUGAAUGAAUCAGUUCUACAAUAUCAAAGACUUAGCUCCUGAAUUUUGCUAAGAUAGUGUGCCUUACGGUUGGAUUCAAGUGUUCGUUUCUUUCUUUUUGGCCAAAUUGAUCAGCUAAAUUGAAUCUUAAUUUGUACCAUACCGAAAGGAUUCAUCUUAAACUUUCAGUCAAUAUAUACAUGUAAAAUAUACAUAUUUGGCAAGCAGAGUA
Sequence
(XR_003243266.1):
CAGAUGGUGCUGGGCAGGAGAUGAAGAGAACUAGGAGAGACAAUAGCAGCAUACUGCAGUAACUAGAGAGCAAUGGAAAAGCUUUGCUUGUGGAUCGUCAUGGAUGAGUUCCAAAUACCAUCUUGGUUUUGUCUACCAAGAGAGUUGUAGUUAGACUUUUCCUUGAAAUAGGAUUUGGCAGAUGGUGAUGUUUCAAGGAGGGAUAGCUCCAGAAACAGCGAUUAUUCGAUCUGGGAACCUGACAUUCACUUUCCUCCAUCAUCGGCUGUGGACUUCCUCUAUACAGCUGGUUGCUUUGGUUCCGUUAAGGGGAUGUCAUCGCUGCUAAGCAUAGCAACAACAUCAGACAUGGUGGGGCGCUCCGCUGAUUUCUCUUGAACACACAUUAGUGCCACCACAAGACAUUUCAUCAUUUCUCCAGAUAUUCGUAGAUCAGUAUCUUCUGUUCCUCAUGAACACAGCAACCGAGCAACCUAACAAGGUUUUUGUGCUGAAGUUUUGCUACAAGCUGGAUCUCAUUUUUGAACUCCACUAGACCUUGUCUUGACUGUGCACCAAGUUUUUUUAUUGCUAACUCUUGUCCAUCAGGAAACAGCCCCUGUAAAUUUCAUCAAUGAAAUCCUACAUACAUAUGAUGCCAUCAGAAUUAGAUGAUACUGUUACAAGAAAGUACCUUGUAAACUGGGCCAAAGCCACCCUCGCCUAAUAUGUUAUUGGCUGAGAAGUUGUCUGUAGCAUCAGCAAGCUGGGAAAAAUCAUACAAGGAGAACUCUGAACCAGCAUCUUCUAUCUUCCAAAGCCGCAUAACUUCAUCCAUGUCUGUGGUCUGCUCCAUCAAGUUUAUUUUCACUAGAUGCACAUCCUUCAUUAGUUCUUGCAUGUAACUGAAGAAACAGAAAAACAGGCGUGUGCAGAUGAUGGAAAGAGAGUAAACAGUAGCAAUGAUCAAGAUUGCAUGUCCCUUCUUUUGCCCUGAAUUUUGAAACAUAGAAUGGUUUACAUGUAGUGAAUGAAUCAGUUCUACAAUAUCAAAGACUUAGCUCCUGAAUUUUGCUAAGAUAGUGUGCCUUACGGUUGGAUUCAAGUGUUCGUUUCUUUCUUUUUGGCCAAAUUGAUCAGCUAAAUUGAAUCUUAAUUUGUACCAUACCGAAAGGAUUCAUCUUAAACUUUCAGUCAAUAUAUACAUGUAAAAUAUACAUAUUUGGCAAGCAGAGUA
Sequence
(XR_003243267.1):
CAGAUGGUGCUGGGCAGGAGAUGAAGAGAACUAGGAGAGACAAUAGCAGCAUACUGCAGUAACUAGAGAGCAAUGGAAAAGCUUUGCUUGUGGAUCGUCAUGGAUGAGUUCCAAAUACCAUCUUGGUUUUGUCUACCAAGAGAGUUGUAGUUAGACUUUUCCUUGAAAUAGGAUUUGGCAGAUGGUGAUGUUUCAAGGAGGGAUAGCUCCAGAAACAGCGAUUAUUCGAUCUGGGAACCUGACAUUCACUUUCCUCCAUCAUCGGCUGUGGACUUCCUCUAUACAGGGGAUGUCAUCGCUGCUAAGCAUAGCAACAACAUCAGACAUGGUGGGGCGCUCCGCUGAUUUCUCUUGAACACACAUUAGUGCCACCACAAGACAUUUCAUCAUUUCUCCAGGAAACAGCCCCUGUAAAUUUCAUCAAUGAAAUCCUACAUACAUAUGAUGCCAUCAGAAUUAGAUGAUACUGUUACAAGAAAGUACCUUGUAAACUGGGCCAAAGCCACCCUCGCCUAAUAUGUUAUUGGCUGAGAAGUUGUCUGUAGCAUCAGCAAGCUGGGAAAAAUCAUACAAGGAGAACUCUGAACCAGCAUCUUCUAUCUUCCAAAGCCGCAUAACUUCAUCCAUGUCUGUGGUCUGCUCCAUCAAGUUUAUUUUCACUAGAUGCACAUCCUUCAUUAGUUCUUGCAUGUAACUGAAGAAACAGAAAAACAGGCGUGUGCAGAUGAUGGAAAGAGAGUAAACAGUAGCAAUGAUCAAGAUUGCAUGUCCCUUCUUUUGCCCUGAAUUUUGAAACAUAGAAUGGUUUACAUGUAGUGAAUGAAUCAGUUCUACAAUAUCAAAGACUUAGCUCCUGAAUUUUGCUAAGAUAGUGUGCCUUACGGUUGGAUUCAAGUGUUCGUUUCUUUCUUUUUGGCCAAAUUGAUCAGCUAAAUUGAAUCUUAAUUUGUACCAUACCGAAAGGAUUCAUCUUAAACUUUCAGUCAAUAUAUACAUGUAAAAUAUACAUAUUUGGCAAGCAGAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.72%
ME_num:
MEP:
67.89%
HE_num:
HEP:
24.19%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.63
Avg Expression:
9.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.64812672540539 | 0.0145414362630378 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.21654139573107 | 0.0383964140237762 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.66822869155144 | 0.00547492021318464 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.72590775395261 | 0.0149049978939105 |