Chr:
Chr7
Start:
14714964
End:
14717849
Strand:
-
Ref_name:
LOC4343082
Sequence
(XR_001547294.2):
CCCAAUUUCUCCGCAAUCCUUCCCACGCGCGUCUUCUCCCCUUUCCGCGUGUGCCCUCUCCCCUUUCAGCUUCCUCCAUCGCGCCUCUCUUCCCAACCGUUCUCCCCGCUUCCAUCGCCGCCGCCCCCGCCCGCUACUCGCGUGCUUCGCCCGUCACACGGUGACUCACACCGAUCCACGCCGCCACCGACGACGAUCUCCUCCGCGCCGCCCCUCCGUGCAACCCCUAACUGCCGCCCCCAUUCCUCCCCUCACCAUCCAACCUCGCCACCUGACGAUUCCCCUAAGCGCCGCUCUCCCCGCUUCCAUCGCCGCCCCCCGCUGCUCGCGCGCCUCCGCCCAUCGCGCCGAUCCACGCCGCCACCGAUGACGAUCUCCUCCGUGCCGCCCCUCCGUGUAUCGUCUAACUGCCACCCCAUCCCUUCCCUCACCAUCCAACCUCGCCGCCCGACGAUUCCCCUAAGCGCCACGCGCUCUCAUCCGUCCCAUCACCAUCUCCUUCCAACCUCUCCGGCCAUCCGCCCUCAUCCCUCCCCUCGCCAUGUCCUUCCAACCUCAUCGGCCAUCCGGACGUCGCCCCCUGCCCGUCGGAGAUCGACGGCCGCCGGUUCCACCAACCACCGCAAUUGACCCCAUCUCUCAUCUCUGUGUUUACUGAAUAUUUGGUAUUAUACGGUGUUUAUUCAUCUCUCAUCUCUGUGUUUAUUCAGCUAUGUUAGGGAUGUGGAACACAAUUCUUCGUGUUACUCACUGAUUUAACUGAAAUUUUGAUUACUGAACACUUGCAGCAUAGUGUUUGAUUUUGACCAAAUCCACUAUAGUGAUGGCAGAUGAACAGUGAUACUACUUCAACAUCAGAAAUUUUCUGCAUGUUGUGAGGAUUGUUCAGCUGGCUUGCACACAUUAAGAUAUGGAUAACAAUAUUGGGGGCUCCACACCAGCAUCGUUAACAAGAUCACGCCCUUUUGCUGAUAUUACUAAUACAAGUGCCGGGGAUAAAAAAAGAACGUAACAGUAUUGGGUCUCCCCCCUCUUAUCUUUAACAACAUCAAGAGUUUUUUUUGUCAGUUAUAUUCAGUCCAUCAAGAUGUCACUUGCGUACUAAUUUCGCAAGAUUUCCUCCCUCAGCCCUGUUUGCCGAUAUUACUAAUGCAAGCGCGGGGGGAUUUACAAAUAAACCAUGUCAGUAAGAGAUGCACAUCCUCCAAUUUGCCGCAAAAGGAAAUAUGCAAAAUCUGCAAGAAGGUGGUGCUAAUCUCAGCGCAUUAGAAUUAAGAAGGAAGUGAUGUGACCAUGGCUACUAUGGAUACAACCGUUGCUCACAUCAUAGAUGAACAACAAGAUAUUAAGUUCAAGUCCUCCAAGUGCUGGAAUCCGAUUCUGCUACACUGCUGACUUCAAACGGCCACCAAAUCUGCAUACGACCUCCGUUUUCGGCCCGUGAGUACUUGAUGGAAAGCUCUCGGAGUCGUCUUUCCAACGGAUCCAGCAUCAUCCCCGAAUUCCAUCUUGUUUUGACGCAAUCACAAAAACAAGGUGCUGCGUCACCUGUCAUGGGCCUUUGGGCUUGUAACUUCGUUUGGGACCCCGGCCCAAGUGGGGCCCAGUGGGGUGCGCCCCAAUCUGGUAGAGCACGACCCUAGGAUCCUCUUGGUCGUUCUCGCACCCCUAUAAGUAGCCAGAUACCCCUUCAGGGUUGCUUAGGGUUUUGAUUAAUUGUAAGUUUAGCCAUUGCUACUUAGCUUGCAGCGCGCAUGUCGGCUAGACCGUCCAUCUGCUUGUUCGAAACCUCACUUUAUCGUGUAUCAAUUCAUCUUUGUGCGUCUUGUCUAUCUAAUAA
Sequence
(XR_001547295.2):
CACCCAAUUUCUCCGCAAUCCUUCCCACGCGCGUCUUCUCCCCUUUCCGCGUGUGCCCUCUCCCCUUUCAGCUUCCUCCAUCGCGCCUCUCUUCCCAACCGUUCUCCCCGCUUCCAUCGCCGCCGCCCCCGCCCGCUACUCGCGUGCUUCGCCCGUCACACGGUGACUCACACCGAUCCACGCCGCCACCGACGACGAUCUCCUCCGCGCCGCCCCUCCGUGCAACCCCUAACUGCCGCCCCCAUUCCUCCCCUCACCAUCCAACCUCGCCACCUGACGAUUCCCCUAAGCGCCGCUCUCCCCGCUUCCAUCGCCGCCCCCCGCUGCUCGCGCGCCUCCGCCCAUCGCGCCGAUCCACGCCGCCACCGAUGACGAUCUCCUCCGUGCCGCCCCUCCGUGUAUCGUCUAACUGCCACCCCAUCCCUUCCCUCACCAUCCAACCUCGCCGCCCGACGAUUCCCCUAAGCGCCACGCGCUCUCAUCCGUCCCAUCACCAUCUCCUUCCAACCUCUCCGGCCAUCCGCCCUCAUCCCUCCCCUCGCCAUGUCCUUCCAACCUCAUCGGCCAUCCGGACGUCGCCCCCUGCCCGUCGGAGAUCGACGGCCGCCGGUUCCACCAACCACCGCAAUUGACCCCAUCUCUCAUCUCUGUGUUUACUGAAUAUUUGCAUAGUGUUUGAUUUUGACCAAAUCCACUAUAGUGAUGGCAGAUGAACAGUGAUACUACUUCAACAUCAGAAAUUUUCUGCAUGUUGUGAGGAUUGUUCAGCUGGCUUGCACACAUUAAGAUAUGGAUAACAAUAUUGGGGGCUCCACACCAGCAUCGUUAACAAGAUCACGCCCUUUUGCUGAUAUUACUAAUACAAGUGCCGGGGAUAAAAAAAGAACGUAACAGUAUUGGGUCUCCCCCCUCUUAUCUUUAACAACAUCAAGAGUUUUUUUUGUCAGUUAUAUUCAGUCCAUCAAGAUGUCACUUGCGUACUAAUUUCGCAAGAUUUCCUCCCUCAGCCCUGUUUGCCGAUAUUACUAAUGCAAGCGCGGGGGGAUUUACAAAUAAACCAUGUCAGUAAGAGAUGCACAUCCUCCAAUUUGCCGCAAAAGGAAAUAUGCAAAAUCUGCAAGAAGGUGGUGCUAAUCUCAGCGCAUUAGAAUUAAGAAGGAAGUGAUGUGACCAUGGCUACUAUGGAUACAACCGUUGCUCACAUCAUAGAUGAACAACAAGAUAUUAAGUUCAAGUCCUCCAAGUGCUGGAAUCCGAUUCUGCUACACUGCUGACUUCAAACGGCCACCAAAUCUGCAUACGACCUCCGUUUUCGGCCCGUGAGUACUUGAUGGAAAGCUCUCGGAGUCGUCUUUCCAACGGAUCCAGCAUCAUCCCCGAAUUCCAUCUUGUUUUGACGCAAUCACAAAAACAAGGUGCUGCGUCACCUGUCAUGGGCCUUUGGGCUUGUAACUUCGUUUGGGACCCCGGCCCAAGUGGGGCCCAGUGGGGUGCGCCCCAAUCUGGUAGAGCACGACCCUAGGAUCCUCUUGGUCGUUCUCGCACCCCUAUAAGUAGCCAGAUACCCCUUCAGGGUUGCUUAGGGUUUUGAUUAAUUGUAAGUUUAGCCAUUGCUACUUAGCUUGCAGCGCGCAUGUCGGCUAGACCGUCCAUCUGCUUGUUCGAAACCUCACUUUAUCGUGUAUCAAUUCAUCUUUGUGCGUCUUGUCUAUCUAAUAAUUCAGUUGCUUUCUAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.76%
ME_num:
MEP:
57.72%
HE_num:
HEP:
19.31%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
22.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.36071856862308 | 0.00461326223953818 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.74279910662171 | 2.68687947061244e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.45425856432688 | 0.000976054200079841 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.00056321265908 | 0.0155188844549844 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.75327446782439 | 0.00072187859083923 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.17025576477375 | 0.0277630889911742 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.27387470029778 | 0.0104159527809921 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.6168469789497 | 0.000242083946913789 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.04075839825176 | 0.0281621618230232 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.30197128708465 | 0.00107255376983068 |