OSA-LNC4342991


Function Link


Basic Info

Chr:

Chr7

Start:

12652870

End:

12656490

Strand:

-

Ref_name:

LOC4342991

Sequence
(XR_001547138.2):

UUAUCUCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGGCGGAGAACUUGGAGCUUCUAACUGGUAGCUCGGAUUUGAUUUCUAGUGUAGCUAGUGACUAAGACAUACUCCAUCCGUUUCACGAUAACCAAGUGGAGAUAAAAUUCUUGUUUUAUCUAUAUGAUGCAAUUCCUUUCCUUGAGGAUUGCUUCCAUGAGCCACCCAGUACAACACAACUAAAAUCAUAUGGAAAGAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA

Sequence
(XR_001547142.2):

CCUCCUUAUCUCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGGCGGAGAACUUGGAGCUUCUAACUGGUAGCUCGGAUUUGAUUUCUAGUGUAGCUAGUGACUAAGACAUACUCCAUCCGUUUCACGAUAACCAAGUGGAGAUAAAAUUCUUGUUUUAUCUAUAUGAUGCAAUUCCUUUCCUUGAGGAUUGCUUCCAUGAGCCACCCAGUACAACACAACUAAAAUCAUAUGGAAAGAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGGGAUGGAUGCCGAGCCAGCUCGGCUCGGCUCGGCUCGACUUGCUCUAGCUCGUUUAGAUAACGAGCUGGCUCGGCUCGGCUCAUUAUCUAAACGAGCAGAAAACGCAGCUCGGCUCGGCUCGGUCAGUAGCUCGAGCUAGCUCGUUUCGGCUCGCGAGCUGGAGAGGGCAAGAUAUCAGACAUCAAGAUUAGAAGAGCUAGGACAACGGAACGUGAGCCGACGAGCGGCCUGCAGCGGCGAGGACGAGCACGACGGUCGACGGCAAGGCAGACAGGCAGACCGCAGCGGCGAGUUCGAGUGCGAUGACCGACGACACAAAAAUCUGCGGUGCCAAGGUGACAGCGCACGCGACGGCCAAGCUGGGGCAACGCCGCGACGACCGACGGUGCUGCAGCCCUCAGCGCAGAUUGGCAGAUGGUCGCGACAGGGAGGUGGCGAUGGCGCAAGCACUAGAGACCGGGAAGGAAGGGGCAGCGCGGCGUGGCUGCGAGGUGCAUGCUGGGCGAUGAGCGGCAGACUGGCGGCGGAUAGGCAGAGUGAAAAGGAGAGAUCGAGACUCUCGAGAGGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA

Sequence
(XR_001547143.2):

UCUCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGAACCAAGUGGAGAUAAAAUUCUUGUUUUAUCUAUAUGAUGCAAUUCCUUUCCUUGAGGAUUGCUUCCAUGAGCCACCCAGUACAACACAACUAAAAUCAUAUGGAAAGAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA

Sequence
(XR_001547144.2):

UCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGAAGAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA

Sequence
(XR_001547145.2):

UCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA

Sequence
(XR_001547146.2):

AUCUCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGAACCAAGUGGAGAUAAAAUUCUUGUUUUAUCUAUAUGAUGCAAUUCCUUUCCUUGAGGAUUGCUUCCAUGAGCCACCCAGUACAACACAACUAAAAUCAUAUGGAAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA

Sequence
(XR_003243510.1):

CCUCCUUAUCUCUUCCACCCAGCCAGGCCAGGUUCACAGUCCACAGUCAACACUACACUCCACAGCCAGGCAAAGCACCGACGCACGCGCCCCUUCUCUUCCCUCUCCGUGGCGGCAUGGCGGCGUGCCCCCUCCUCCCGCUGCUCCAGCUCUAGCCCUCCCUCCACAACAUCCUGGACAUGGAUCCUCUACCUUUGGCUCGCCGGAGCAAUGGGGCCACCAGACUGCCAGCGAUGAGUCCGGGGGCAUCCAGAUCCAGCGCCACCUCACCCAUGGCAGCUGCUCCGGUGCGACGAUGGCCAGGGGCCGCGCUGCCCUCCUCAUCCCUCCACUGGUUAGUGAAGAAGUUGGGUGAAGAAGGACCCGGGCAAGACUUACAUGCUAGCUGCCUCUCCAUGGCGGAGAACUUGGAGCUUCUAACUGGUAGCUCGGAUUUGAUUUCUAGUGUAGCUAGUGACUAAGACAUACUCCAUCCGUUUCACGAUAACCAAGUGGAGAUAAAAUUCUUGUUUUAUCUAUAUGAUGCAAUUCCUUUCCUUGAGGAUUGCUUCCAUGAGCCACCCAGUACAACACAACUAAAAUCAUAUGGAAAGAUUGGAGCCAUGUUCCAAGAAGUCAUUCCAAAAUUGCAAUGUCUGUUCCAGUACUGAACCAAUCCAGCUCGGCUCCAUUUCAAGCCAUCAUAGGCAUCACCUCAAAGACAUUCUACUCACUGCAAAGCCAGGGAGCCAUUUCUUUCUCUCAAGUUGGCAUGCGUUCCUUUUUCUUAGUUAAAUCAUAAAUUAACAGGCCCAACUUAAUUAUCAUGGAAUAAGCCACAGCAAUUUUACCCACCUAAGGUCACUCUGUGCAUUCAUUUCAGGACAAUGACAAGCAUUGGGAUAGACAAGGCAGUAGAUUCUCAAUCAAUUGGUGCUGUCUAGUAGGUGAAGAGUGACACCGAAGCAGUCACUUGGGUGUAGGGAUGGAUGCCGAGCCAGCUCGGCUCGGCUCGGCUCGACUUGCUCUAGCUCGUUUAGAUAACGAGCUGGCUCGGCUCGGCUCAUUAUCUAAACGAGCAGAAAACGCAGCUCGGCUCGGCUCGGUCAGUAGCUCGAGCUAGCUCGUUUCGGCUCGCGAGCUGGAGAGGGCAAGAUAUCAGACAUCAAGAUUAGAAGAGCUAGGACAACGGAACGUGAGCCGACGAGCGGCCUGCAGCGGCGAGGACGAGCACGACGGUCGACGGCAAGGCAGACAGGCAGACCGCAGCGGCGAGUUCGAGUGCGAUGACCGACGACACAAAAAUCUGCGGUGCCAAGGUGACAGCGCACGCGACGGCCAAGCUGGGGCAACGCCGCGACGACCGACGGUGCUGCAGCCCUCAGCGCAGAUUGGCAGAUGGUCGCGACAGGGAGGUGGCGAUGGCGCAAGCACUAGAGACCGGGAAGGAAGGGGCAGCGCGGCGUGGCUGCGAGGUGCAUGCUGGGCGAUGAGCGGCAGACUGGCGGCGGAUAGGCAGAGUGAAAAGGAGAGAUCGAGACUCUCGAGAGGCAGGAUUUGCAAGUCAACUGGCUCAUCUUCAUAUUAUUUGAGGUGUUGUCGGACUGCCUGCAAUGCCAUUCGUCAACUCUUUUCUCGUUUCCCUACCUCCUUGGUUAUCUAACCUUAAGAAGUAAUAUUCAAAUUUCAUCUCAGUUGUAGAUGUCUAUGAGAUUGGCAUUGCUAUUGUAAUUCACAUUAGAUUGUUGUCAAAUCGAUUAAUUGAACGUGGAUGUCAAUGCAUUGGAAUCCAUUCUUCCAUUGUAUGUGUGAUCGCCUAUGAUGUGUUAUUAAGCUCCUACUAUUCUGGUGUAAGCAAAUAAUAUAAAUGUAUCAGCAAACCCAUUUUAGUUUUGCCCUCAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

98

LEP:

19.92%

ME_num:

3

MEP:

0.61%

HE_num:

390

HEP:

79.27%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.80

Avg Expression:

211.43

Tip: OSA-LNC4342991 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.019473861092381.37952318502006e-09
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h1.355335357038860.0270486922166458
3Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-1.231367353957662.57576860702669e-18
4Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"2.564254792625264.34105794669152e-20
5Nipponbare // leaf // control--/--Nipponbare // leaf // drought2.564555194826933.83677435943914e-20
6Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"2.564091656746024.53376572974877e-20
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM2.844225709355471.37323933618745e-13