Chr:
Chr7
Start:
6234832
End:
6237062
Strand:
-
Ref_name:
LOC4342719
Sequence
(XR_001547590.2):
GUUGGUUCUUGUGCAGAAUCUGAGGGCGGAAGCAAAGGGGGAAACAGUCCCACUCUGAAGAGUCUGAAGAUUCCCCAAGGUCUAUUUGGUUUCCAAUCUUAUUGAAGCAGGAGAAGAAUUGUACGUGCUGGGGUGGUGAAACACAAGAUCCUGAUUCAAUCACUGCCAUGGGUGAAGGGUUCUUGCAAACUGGAGUCGAUUCUGUUGUUGCAUGGUGAGGUGAAUUUGCCAUCUCAGGAUUAUACAGAGGCUAGGUGUUUGUGGAAUUGCCUCCCUGGAAGCAGCUGUAGGGAAAGGCUGGAGAGGAGAGGAAAUUGAGGGAGAAGAGUGCGAGGAUGACGAUGUCGUGGGGGCUUGCGGCUCACAUUGUGGACAUGGUGUGGAUGGUGCUCGCCGGCUGGGUUUCAACGUGCCUGGUGAUCGCCGGUGAGAUAGCCCGCGGCAUGCGGAACGGGGAGAUCAGCCCCUUUGUUGUUGGCUGAAUCCUCCUGGGCCAUUCUUCCUUCAUUCAUUGAUGCAGAUAGAUUUUGUCGAAUCCAGUCCUUCAAUACACAUUGCAUUAUACUGUACAGAGCCCAUAAAUCUCGAUUAGCGUUCCACUGAUUGCCUUCAGGCGUAAACAGAAGUGGUAGACUCUAGGUCAUUAUCUUUUCAUUCUUACAUUUUUUUUAUGUCAUGUAAUCCUGUAAACAUUUGUGCAACUACAUAUGAACAAUCAUGUCAUCCCUAUGUUCUUUUUCACCCUCUCAGCAAGGGUACUGAACUGUUUUGAUCGAUACUCAAAUGAAGUUCCACAGAUUAUGCUGCAUUAUCAGGCUAUGAACAGGAAAUGUAAACUAAUUCUUAAAGGAGAGAAAAAUCUCUCUUUAUUUU
Sequence
(XR_001547588.2):
AAUUAUUUUUCCUGUCUUAUCUCUUCUUGAUUCCGUCUAAAUUUAAGGAUCUAUCCGUCCAUGGUUUGGUAGAAUCUGAGGGCGGAAGCAAAGGGGGAAACAGUCCCACUCUGAAGAGUCUGAAGAUUCCCCAAGGUCUAUUUGGUUUCCAAUCUUAUUGAAGCAGGAGAAGAAUUGUACGUGCUGGGGUGGUGAAACACAAGAUCCUGAUUCAAUCACUGCCAUGGGUGAAGGGUUCUUGCAAACUGGAGUCGAUUCUGUUGUUGCAUGGUGAGGUGAAUUUGCCAUCUCAGGAUUAUACAGAGGCUAGGUGUUUGUGGAAUUGCCUCCCUGGAAGCAGCUGUAGGGAAAGGCUGGAGAGGAGAGGAAAUUGAGGGAGAAGAGUGCGAGGAUGACGAUGUCGUGGGGGCUUGCGGCUCACAUUGUGGACAUGGUGUGGAUGGUGCUCGCCGGCUGGGUUUCAACGUGCCUGGUGAUCGCCGGUGAGAUAGCCCGCGGCAUGCGGAACGGGGAGAUCAGCCCCUUUGUUGUUGGCUGAAUCCUCCUGGGCCAUUCUUCCUUCAUUCAUUGAUGCAGAUAGAUUUUGUCGAAUCCAGUCCUUCAAUACACAUUGCAUUAUACUGUACAGAGCCCAUAAAUCUCGAUUAGCGUUCCACUGAUUGCCUUCAGGCGUAAACAGAAGUGGUAGACUCUAGGUCAUUAUCUUUUCAUUCUUACAUUUUUUUUAUGUCAUGUAAUCCUGUAAACAUUUGUGCAACUACAUAUGAACAAUCAUGUCAUCCCUAUGUUCUUUUUCACCCUCUCAGCAAGGGUACUGAACUGUUUUGAUCGAUACUCAAAUGAAGUUCCACAGAUUAUGCUGCAUUAUCAGGCUAUGAACAGGAAAUGUAAACUAAUUCUUAAAGGAGAGAAAAAUCUCUCUUUAUUUU
Sequence
(XR_001547589.2):
UUCCUGGUCAGAGACUCCUAUGUGGCAGUCUCCAGUUGGUUCUUGUGCAGGUUGGUCCUAGGUGUUUCUUGAAUUUGCUCAGUUGGGUCAGUUUGACAGCGACAGGUGAAAGGCAAGAGUUUGGGGAAAGCAAGCAAGAAACUUGAUGAAUCUGAGGGCGGAAGCAAAGGGGGAAACAGUCCCACUCUGAAGAGUCUGAAGAUUCCCCAAGGUCUAUUUGGUUUCCAAUCUUAUUGAAGCAGGAGAAGAAUUGUACGUGCUGGGGUGGUGAAACACAAGAUCCUGAUUCAAUCACUGCCAUGGGUGAAGGGUUCUUGCAAACUGGAGUCGAUUCUGUUGUUGCAUGGUGAGGUGAAUUUGCCAUCUCAGGAUUAUACAGAGGCUAGGUGUUUGUGGAAUUGCCUCCCUGGAAGCAGCUGUAGGGAAAGGCUGGAGAGGAGAGGAAAUUGAGGGAGAAGAGUGCGAGGAUGACGAUGUCGUGGGGGCUUGCGGCUCACAUUGUGGACAUGGUGUGGAUGGUGCUCGCCGGCUGGGUUUCAACGUGCCUGGUGAUCGCCGGUGAGAUAGCCCGCGGCAUGCGGAACGGGGAGAUCAGCCCCUUUGUUGUUGGCUGAAUCCUCCUGGGCCAUUCUUCCUUCAUUCAUUGAUGCAGAUAGAUUUUGUCGAAUCCAGUCCUUCAAUACACAUUGCAUUAUACUGUACAGAGCCCAUAAAUCUCGAUUAGCGUUCCACUGAUUGCCUUCAGGCGUAAACAGAAGUGGUAGACUCUAGGUCAUUAUCUUUUCAUUCUUACAUUUUUUUUAUGUCAUGUAAUCCUGUAAACAUUUGUGCAACUACAUAUGAACAAUCAUGUCAUCCCUAUGUUCUUUUUCACCCUCUCAGCAAGGGUACUGAACUGUUUUGAUCGAUACUCAAAUGAAGUUCCACAGAUUAUGCUGCAUUAUCAGGCUAUGAACAGGAAAUGUAAACUAAUUCUUAAAGGAGAGAAAAAUCUCUCUUUAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.81%
HE_num:
HEP:
98.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.75
Avg Expression:
123.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.05164452762389 | 6.02644764804749e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.11962620556009 | 2.8813739389771e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.01330921998189 | 3.28506509602577e-06 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.05076657673556 | 0.00161906037458733 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.61405611380434 | 9.16256313207041e-61 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.94865700073603 | 9.04081621980842e-29 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.03970081486045 | 0.0110693927568857 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.0386315638732 | 8.83020809381579e-28 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.9471594887414 | 2.50246720711459e-83 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | 2.07604225804195 | 4.57132632836875e-43 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.84393031598685 | 1.69826925205972e-11 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.0990057709296 | 5.31814822923957e-23 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.53172064573407 | 5.33513370793754e-18 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.09746985344475 | 9.79364096308747e-15 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.09739115080553 | 1.08608437562534e-14 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.09728100559916 | 1.00836998063834e-14 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.47204580441219 | 3.2046747255899e-27 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.90967439579087 | 1.66120904877038e-161 |
| 19 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.93473343284639 | 3.19825058640526e-24 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.70282070632063 | 6.55311849223695e-55 |