Chr:
Chr7
Start:
2400229
End:
2401004
Strand:
+
Ref_name:
LOC4342394
Sequence
(XR_001547442.2):
CGUCUCUCCCAGUUUGUGAGGACCGAUCAAGCGAUCAAACCCUAGCCGCCGCCGCCUCCUCCUCCUUCUCCUCCUCCUCCAGAUCGGCAAUCGGCAUGGCGCUUCGUGCUCUCGCCUCCAAGCUGAGGAUCCCGGCGGCCGCUCCCCGCUGGACUCCUCCGCCGUCUCGCCCCGUCUCCACCGCUCCUAAGCGUAAGCUCUCUGCCACCUCCAAAACCUGUUGAAAAAAGUUCUCUCGAUUUUCAGGAAAUGCUACUCUUGGAACGGAUUCGUGCACAUCAAGACAGGUUUGCGCGGAACAUGAUGAUUUCUCAAGCAAUUGGUAAUUUAGUUGGGUAUGGCAUCUUUUGGUAUCUUGUCAACGAUGUUUCCAAGAACUUGGCAAAUUGAUCGGGUUCAACAAUGAACCUGUUAUGUAUGGCUUGAUGAAGCACCUGUUAUGUAUCUUCUAAAGGUCCUGAAGAUGAACCUGUUAUGUAUGGCCUAGUAUGUGCUGAUGAACAUGUCUAAUUAUUUUGUAUGGAUGAUGAACCUGUUCAAAUCUUACUAUGUUCUGAUCAACAUGUUGAAUUUGUCUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.99%
ME_num:
MEP:
32.11%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.92
Avg Expression:
60.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.36313704043387 | 0.0147916355153454 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.35578843773202 | 0.0211105356467723 |
| 3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.19072232664571 | 0.0168290243802414 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.35087728446241 | 0.00336721283666594 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.20637674754614 | 0.0389184614857402 |