Chr:
Chr7
Start:
182514
End:
183317
Strand:
-
Ref_name:
LOC4342179
Sequence
(XR_001547426.2):
CUUUAUUCCCCAACCUUACCACCAACCAUUCUCAGUGACUUAGGCGGCAGUGAGCUUGAGCAGCGCGGGCGGAUAUGGCCAGUUAUCAUAGCGAGGCAUCUUCCGCUUCUUCCCGUCGCACAUCAGCCUCGCCCAUCCCGCAUCGCAUGGGGCCAAUGGAGUAUCAACCUACGGUGCUGUGCAGAUGCAGAGCGAAGGCGGCACGAUGGAUCUCGUGGAGCCGUGACAACCCGGGGCGACGAUACUACAAAUGUCGCAAUGCUCGAGGCCAACGAGCAGUUUUAUCAGAGAUCUGUUGAAUGAUUUGCGCGAUGCGGUGUGGUCACUAAGGAGGGAGAAGGAUGAACUUUUUGUUGCUGUUAGGGAAGGGCAAGCCAUGGCUCGUGAUGUAGAUACAGCUAGGAGGGAGUUGGCAGCGUUGAAGAAGCAUGUUGUUGAGACCGAUGCAAAAUUGGUUCUGUUGAAAGAACAAAACCGUAGGCUAGAGAAGGAUAGGUGCGUGCUUUUUUUUUGUUUUACUGGCAAUCUGUGGUCUGUUUGUCAUGGUUUGGGUGAUGAACUGAGUAGUAUCAGUGAAUGUUAUUAUGAUGGAAGGUACUAAGAAUGUCAGCUGAGAUGUAUGAGUGAAUGUUGAUGUAAGGUAGCAAGAAUGGCUUGUAAUAUGUUUGAAUGAAUGGAAUUAUCUUUUGUAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.47%
ME_num:
MEP:
24.39%
HE_num:
HEP:
20.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.93
Avg Expression:
62.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.00675589126023 | 0.0371851565267415 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.99573589906277 | 6.56485823851889e-05 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.53626121163201 | 0.0191213789116245 |