Chr:
Chr6
Start:
27668078
End:
27671274
Strand:
-
Ref_name:
LOC4341791
Sequence
(XR_001546387.2):
AACUUAUUCCUUCUCGCUCUUCAAGGACUCGGAGCCGCGGGGUUGGUCCAUUCGCAGAGCUCAGCGGUGGAAUUAGCUCGAAGCUCGAUCAUGGCCGCCGCCGCCGGGCUUGCCGCGCCGCCUCCUACCUCCCGGAUUUCCUCCUUCCCCAGGGCUUUCUCCACCGGGGUGUACAGAAAGACUGUCCUGUGCCCAAAUAUGAAAACUAGACACAUGUUUUAGCCAAUGCAAUUGUAGAACAGCAUUUAUUGGGCCUGAGCUAGUAUUAGCAUUGAUUUCAGAAACCUCAAGACAGCCACCACGCAAAUUUAUCACUGUUUGUCCCCAAAUUUGAAUGUCUAUAUCAAGGAGCCAAGGCAAGCGUGGAAUAAGGAGGGCUUCUGACAGCACCAAUUCAGGACAGUAUUUGAUGUUGAUUUUACCAAGCUUUGGGAACCAACACUUGUUUUCUCUACUCCAUAGAAAACUAGGAAUUCUACUCAGCUUGGGACAAUCUUCUACAGUCAAACUGGUCAGGCUAGGGAAAACAUUGGAGUCAUCUACAUUCCAGUCUUCCAAUUCUGGCAUUGUUUUGAUAAAUAGCCCUUCCAAACAUGGAAACCCCACCACCUGACCACUGCUAUAGAACUCAGAGCCAAUUCUUCUUAGCGCGUGCAUAUUGACUAUAUGCAGCUUCCUAAGGUGAGGGAGGAGUCCCAGUGGAGGAAGAAUUUCCAAUUCAGAACAAUAAUCUAGAUAAAGAUAUUCUAGUGAGCUAAGGCUGAGAUUACUAGCAAGCCAUGAUGGGGUAGUACUGCCCCUAUAGCCUGUAAUAUGGAGACAACUUACAUUUGAAUGUGGUGCAAGACCUUCCAGGACGUGGUAUUGUUCUGAAGGCUCUUGUACACAAGAACCGGCACUCCAUGACAGCCACAGCUCAGUUAGGUGCCUUUUGUCACUCAAUCUAGCCUUUGCUGCUUCUUCAUUGCCAUCAACAUUCUCGAGAUUCUGAACUUUCAACAAACCUCUUAGGUUCCUCAACCUUUUCAGUUGUCCAAUGUCAAAGCCCCUGGUUUUCCUAACACAGAACUUAUCCAACAGAAGCAAGGAAGUCAUAUUGCCAACACAUGGAACUCCUGUGAGUAAAUGUUUUCCUUCAUCAGCAAUCAGAUGCUCAAAGUUUAAUAAGUUGGCUAUCCUUGGAGGUAAAUGAAGAAGGCACGGACAGUGCUUUAUGUUCAAAACUUGUAGUAGGUAAAGCUUGCAUACGGCUUCAGGUAAUUCUUCAAGGCGUGACCAUCUGAGGUCUAGGUAACGCAAAUGUAUGAAGUUACUAACUGCUGCAAGUUGCUCUUUUCGGAAAGUGCAGGGCAGAGACAACAGUCUGAUAGUACUAGGCCAAUUGCUCUGGACAAAGACUACCUCAGAACCUGGAGACCAAAUUGAUGAAGAGGCAGAGAACAUUAUAGUCCGCAAAUUUUUUAGAUGCAGCAAGCCAGCCCAUGAGUUCUUUUGGAUGCGGCGUUUCAUCUGAAUACCAGAACAAUCGAGUGGAUGACAUAAGCCCAUAUCACGAGCAUGAUCAGAAUGAGAGAUAUACAAGUGACAAGCCUCAACUGAGAUAGGGAAUUUACCAUUAGUUGCCUGGAAUUCCCCUUCUGCAACAAGUUGAGCAAGAUCAUGUAACAACCCAGGUAUCAUGUAGUGGCCACUCUCGAUUAUAUGGAAGAAUGAGCAACUGAGUAACUCGUUAAGGUACUCCUUUCCUACAUCUUCCAAUGUCUGAUCCUCUCCAGGUGUUGGAACAAGGCCUUGUGCCAUCCAAGCAAAUAUAAGCUCUUGCUCAGUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.99%
ME_num:
MEP:
73.98%
HE_num:
HEP:
13.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.85
Avg Expression:
19.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.31862561122752 | 1.22053298092655e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.42102338206041 | 9.96054624540822e-15 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.88004213726016 | 0.0486688949612857 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.93952149885494 | 0.0147919309625703 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.93955809669627 | 0.0150314141178211 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.93971486180792 | 0.0148242095133985 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.49158974836 | 0.00120457179344439 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.0527684688567 | 0.00171543541227498 |