Chr:
Chr6
Start:
18467303
End:
18468089
Strand:
-
Ref_name:
LOC4341148
Sequence
(XR_001546624.2):
GCCUUUCAGCCCUCUUGCUUUAGUUUGUUGAUCCCCGACUAAAUCUCAUUGGAAAACAAGCUAGAAAACAUGGAAGGAGUGAAGAGUUUGAUCAUGUGUAUGCUAGUGCUAGGCUUAGUCCUGCAACAAGAGAAGAUCCAGGUGGAAGCAAAGAGUUGUUGCCCAUCCACCACAGCAAGAAACGUCUAUAACUCAUGCCGUUUCGCGGGUGGCUCAAGAGACACCUGUGCUAAACUUUCUGGCUGCAAAAUUGUUGAUGGGAAUUGCAAGCCUCCUUACGUUCACCAUACCCUUCACCCUGAAGCUGAGGAAUCGGAGGUACUUGACUUCUGCAAGCUGGGAUGUGCUUCGUCUGUGUGCAGCACCAUGAGCACUCUUUCUAGCAAUGAAGAAGCGAAUUAUGCCGUCGAUCGUUGCAACGAUGCAUGCCACCGCUUCUGUACCAAGGAAGCUGAGACUGUCACCGUUGUUUCCUAAGCAAGUGCAACAUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.46%
ME_num:
MEP:
7.72%
HE_num:
HEP:
25.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.92
Avg Expression:
1301.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.96488211926512 | 0.0380710086435722 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.19190172249747 | 0.0123512404801809 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.6474041732938 | 6.81907667491057e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.27006924593467 | 1.42730677640101e-40 |
| 5 | Azucena // root // control--/--Azucena // root // Al | 1.04045900824705 | 0.00827644353794016 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.79671528032328 | 1.72755858512683e-32 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -6.58883919284386 | 6.58827697829865e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 11.3518441304906 | 1.07011866114812e-93 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 8.41982448740058 | 1.12038969681177e-47 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 10.4803439272701 | 9.03034681344399e-78 |