Chr:
Chr6
Start:
15983123
End:
15985323
Strand:
-
Ref_name:
LOC4341035
Sequence
(XR_001546860.2):
CUAAUAUGUAAAACACUCCCCCUCACAACCAAUCCCCCGGCACCCUAUCCCUGCGCUCCCUUCCCCCACCCACGCCAUAAUUCGAGUAAUUUGUUUACUUUAUGUUACCCAACGCUAACAUAUAUAGAUCCUAUUUUUUCGGAUCUAAGAGAGAGAGGUGGUGGCUAGUGGAGCUGUUGAGCACCGACGCCCCUGGCUAGGAACGGCGGCAGAUCUGGCGGCUCGGUGCGAAAGCUGAACGGCGGCAGUUACAAGCCCGGCCGUCCUCCAGGCGCGGUGAUCCUCCACCGCCGGCCGACCUCAUCCCCAUCCUUUCUCCCGCCGUCUGGUCGCCGCUAUUUGAGGUGCGCCGGGCGGUGGCUCGGUGGAGCGGUUGAGCGACGGCUGUCGGCUAGGAGCAGCGACAGAGUUGGAAGCUCGGUGCAGAAGGUGAACGGCGACGGUGACAAGCCGGCCGUCCUCCAUUCGUGGCAAUCCAUCACCAUCGGCCAACCUCAUCCCCGUCUUCUCUCUUGCCGUCUGGUCGUCGCCAUUCGAGAUGUGUCGCCCGGGUUCGUCGUCGCUGCAUAAUCCACCUGCCGGCCUGGAUCUGCCCUCCCUCUCUGGCGCACCUGCCGCUUGUCUCCUCUCACUGCUGUCGUCGAGGGGAUGGGGCCCUUCCGGCCGCCCUCCUCCCAGGUAUAGGGCGUCACUAUCCUCAUCCAGGAAGAUGCAGGUGGUUGAUCCUGGCUAUUGUUCUUCGUGGUCGUGGGUAACCUGCUUCUGCUGAGGAGAAGAUCUGGAGAUUCUCAUGUCCUUUUGUCUCAGUUCUGGAUUGCUGCAACAAUGUGUCUAUGCUUGCGUUUUCUUGAUCUAGAUCUCGAGGCGAGACCGUACUGGUGUUAUUGCAUUUAAUUUGUUUUUUUUCCCGAUUCUUGGGUAAAUGCUUCACUUGGGCUUGUUGAGUUUCCAGGAAAGAGAUCCAGGAGGGGAGCACUUUGUGGGGUGAUUUAUCCUUGAUUCUAAAAUGGGAGGAUAGCUGGCACCAGCGUGGUGGUGGUGUUUUUCUUGGAUCACGAUGAAUAUGUGUAUUUGUCUAGUUGUGGUGUUUGGCGAGUUGGGAUGUUACGUGCAGCAGUAUUUUUCUCUUUUUUCCCCUUAUCAUGAGAAUAUGUGUAUUUUGUCUCCCAUGUGUAAUUUUGUUGGUCACUUGAUAGAACAAAAAUUCAAUUAUUAUGACAUAACCAUGUUCUUGUUCUUGUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
9.55%
HE_num:
HEP:
90.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.59
Avg Expression:
46.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.5587643656914 | 3.45929111218149e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.28715624448489 | 3.38333282042188e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.48900150474334 | 1.24866004389725e-09 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.18440963270412 | 0.00215522895273797 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.1236655159529 | 0.0113818668315291 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.57308535531944 | 1.03058494002038e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.3012174930712 | 1.4143068213441e-05 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.1548860437062 | 4.39764585230203e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.42952275564371 | 1.90484587046654e-09 |