RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4340871

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

12062583

End:

12065347

Strand:

+

Ref_name:

LOC4340871

Sequence
(XR_001546471.2):

UAAUGCAGGUGCGUGCGGCGCACACACGCACAUGGUUUAUUCGAAGAAGCAAACACACACACACACACACUCAGGCGACGAUGAGUAAUAUAUCAUCAAAGGAUAUAAUGGAGACAUUAAUUUCCUCGAUCAGCUACUGCUGAUCCUCCUUCUUCGAGAAAUAGCUGGCACAGCCACGCCGAAGCCAUGAUUCAUCGCCAUGUUCCUCUUUUAGUGCUUGAUCCUGACGCUGCGGCUUCUUAGGUGUAAGAACAGGUUUAUUUUUAUGUGCUCUGAUGUCUUUCUUCACCUGCUUAGGGACAUUGUCACAGUCCAGAUCAAGCUCCUUCAAUUUCUCAACAUUGCCAAUGCCAGGGAGAGGCUCCAACUCAGCGAAGGACGGCCGUGACCAGAUGAUCUUCUCAAGGUACGGCGGAAUCGGUGGCUCGACGCAAAGCAUCUCGCCCCCCCCCCUCCCCCCCACGCAUCACCACGAUUUCUGCUUCUCCUCCCGGCAGGCGGCGGCGCUGCCCCCGACCCCCCGACGCAGGCACCGCAUCACCGCAUCUCUCCCGAGCCCCCGACGGAUCACUGCAUCACCGCGGUUUCCGCUAGUCCUCCCGGCAGGCGGCGGCGCUGGUCGCGCCACCCCCGAGCCCCCGGCGCGGUAUUUGUUUUCCCAUAUAUUUUCUGUAAUUAGUUUUUGCCAAACUGAUUGAAAGGUUCUUUAGCGGUUGACAAGGUAUUCCGAGGCCUUCUUGCAGGUAUAUGAACCUCAACUCUAUUGUUUUGUAACAAAAACAAAUCAUUCAAUUGCGACUGUAGUUUAUGAUAGAGUAUCUGCAGAGUUUUCCACUGAUACUGAACAAUGGCACUGCAUAAAUUGUUUCUUUAUGUUAUUUCGAAAGUUUGCAAGUUAUUUCCUCGUUAAUUUCAGUAUUUUGAAAUUUGAAUGGCUGGGUUAUCAGAUCAGUAUCUGAUCCGAUGUGUUCAAUUUGCAUUGUUGUAUUUAAGCCGAAAGAGACCCCCUCGCUGCUGGAGCAAACAACUGCCGGCAGGAAGGUGUGGCAAUAUCUGGCUUGCUAGAUGGAACUGGAGAUUAUGAAGGUGACAGGGUGCUUGUUGGAGAUGUGCCGUGGGGGAUGUUUGUUUCUUCAGUUAAGAGACUGAGAGUACUGAAGACAUCUGACCUAUCUUCAUCUCUUAUAACUUCUGGACGGAAAAGAACAGCAGCUGAGUGUUGACCUUCUUUUUUCGAUCUGCUUUAACACUUUCAGUGACCUGCUGUUCAGAAGAAUAUGAUCCUCUGAGCUUGUAUCAUCGUCUCUUUCUCUCAAUGUCUUGCUGUGCUGAGCUUGUAACCAGCCAUUAGAGAAGACAGUCCGAGAUUAGGGCAAAAGGAUAGCUCCAUCCAAGAGACGAAGGCCAUUCAGUGAGACAUUGCACACAAAUAACCAAUAAGGGUCAGGUUCUUAGUGAGAGAUGGUGAAACAGAAGGGAGCUCCAGUAGCAUGUUUUGGUUCUUGAAGCCUUGCACAUUUCUAGUGGAGUAACAGCAAAAUAACCAGAAGCUUUGAAGAACUGCACUUUAUGUAGUCAGGAUACAUUAUUUCAUUCUAUUCGAUUCCAAUUUGGCCAAUUCAUAUGAUCGACAUUUUUGUCAGGAAAUAAACAGCAAGCAAUGUAUAGUUACUUACCAAAGUGAUACAUGUUUGAGAGAUUCUUUCCAUAUGUUGGGUUCAAGAUAUAGAAAAAUAUUGUUCUUAUGUGGCUUAA

Sequence
(XR_001546472.2):

UGCAGGUGCGUGCGGCGCACACACGCACAUGGUUUAUUCGAAGAAGCAAACACACACACACACACACUCAGGCGACGAUGAGUAAUAUAUCAUCAAAGGAUAUAAUGGAGACAUUAAUUUCCUCGAUCAGCUACUGCUGAUCCUCCUUCUUCGAGAAAUAGCUGGCACAGCCACGCCGAAGCCAUGAUUCAUCGCCAUGUUCCUCUUUUAGUGCUUGAUCCUGACGCUGCGGCUUCUUAGGUGUAAGAACAGGUUUAUUUUUAUGUGCUCUGAUGUCUUUCUUCACCUGCUUAGGGACAUUGUCACAGUCCAGAUCAAGCUCCUUCAAUUUCUCAACAUUGCCAAUGCCAGGGAGAGGCUCCAACUCAGCGAAGGACGGCCGUGACCAGAUGAUCUUCUCAAGGUACGGCGGAAUCGGUGGCUCGACGCAAAGCAUCUCGCCCCCCCCCCUCCCCCCCACGCAUCACCACGAUUUCUGCUUCUCCUCCCGGCAGGCGGCGGCGCUGCCCCCGACCCCCCGACGCAGGCACCGCAUCACCGCAUCUCUCCCGAGCCCCCGACGGAUCACUGCAUCACCGCGGUUUCCGCUAGUCCUCCCGGCAGGCGGCGGCGCUGGUCGCGCCACCCCCGAGCCCCCGGCGCGGUAUUUGUUUUCCCAUAUAUUUUCUGUAAUUAGUUUUUGCCAAACUGAUUGAAAGGUUCUUUAGCGGUUGACAAGGUAUUCCGAGGCCUUCUUGCAGCCGAAAGAGACCCCCUCGCUGCUGGAGCAAACAACUGCCGGCAGGAAGGUGUGGCAAUAUCUGGCUUGCUAGAUGGAACUGGAGAUUAUGAAGGUGACAGGGUGCUUGUUGGAGAUGUGCCGUGGGGGAUGUUUGUUUCUUCAGUUAAGAGACUGAGAGUACUGAAGACAUCUGACCUAUCUUCAUCUCUUAUAACUUCUGGACGGAAAAGAACAGCAGCUGAGUGUUGACCUUCUUUUUUCGAUCUGCUUUAACACUUUCAGUGACCUGCUGUUCAGAAGAAUAUGAUCCUCUGAGCUUGUAUCAUCGUCUCUUUCUCUCAAUGUCUUGCUGUGCUGAGCUUGUAACCAGCCAUUAGAGAAGACAGUCCGAGAUUAGGGCAAAAGGAUAGCUCCAUCCAAGAGACGAAGGCCAUUCAGUGAGACAUUGCACACAAAUAACCAAUAAGGGUCAGGUUCUUAGUGAGAGAUGGUGAAACAGAAGGGAGCUCCAGUAGCAUGUUUUGGUUCUUGAAGCCUUGCACAUUUCUAGUGGAGUAACAGCAAAAUAACCAGAAGCUUUGAAGAACUGCACUUUAUGUAGUCAGGAUACAUUAUUUCAUUCUAUUCGAUUCCAAUUUGGCCAAUUCAUAUGAUCGACAUUUUUGUCAGGAAAUAAACAGCAAGCAAUGUAUAGUUACUUACCAAAGUGAUACAUGUUUGAGAGAUUCUUUCCAUAUGUUGGGUUCAAGAUAUAGAAAAAUAUUGUUCUUAUGUGGCUUAA

Sequence
(XR_001546473.2):

AGGUGCGUGCGGCGCACACACGCACAUGGUUUAUUCGAAGAAGCAAACACACACACACACACACUCAGGCGACGAUGAGUAAUAUAUCAUCAAAGGAUAUAAUGGAGACAUUAAUUUCCUCGAUCAGCUACUGCUGAUCCUCCUUCUUCGAGAAAUAGCUGGCACAGCCACGCCGAAGCCAUGAUUCAUCGCCAUGUUCCUCUUUUAGUGCUUGAUCCUGACGCUGCGGCUUCUUAGGUGUAAGAACAGGUUUAUUUUUAUGUGCUCUGAUGUCUUUCUUCACCUGCUUAGGGACAUUGUCACAGUCCAGAUCAAGCUCCUUCAAUUUCUCAACAUUGCCAAUGCCAGGGAGAGGCUCCAACUCAGCGAAGGACGGCCGUGACCAGAUGAUCUUCUCAAGGUACGGCGGAAUCGGUGGCUCGACGCAAAGCAUCUCGCCCCCCCCCCUCCCCCCCACGCAUCACCACGAUUUCUGCUUCUCCUCCCGGCAGGCGGCGGCGCUGCCCCCGACCCCCCGACGCAGGCACCGCAUCACCGCAUCUCUCCCGAGCCCCCGACGGAUCACUGCAUCACCGCGGUUUCCGCUAGUCCUCCCGGCAGGCGGCGGCGCUGGUCGCGCCACCCCCGAGCCCCCGGCGCGCCGAAAGAGACCCCCUCGCUGCUGGAGCAAACAACUGCCGGCAGGAAGGUGUGGCAAUAUCUGGCUUGCUAGAUGGAACUGGAGAUUAUGAAGGUGACAGGGUGCUUGUUGGAGAUGUGCCGUGGGGGAUGUUUGUUUCUUCAGUUAAGAGACUGAGAGUACUGAAGACAUCUGACCUAUCUUCAUCUCUUAUAACUUCUGGACGGAAAAGAACAGCAGCUGAGUGUUGACCUUCUUUUUUCGAUCUGCUUUAACACUUUCAGUGACCUGCUGUUCAGAAGAAUAUGAUCCUCUGAGCUUGUAUCAUCGUCUCUUUCUCUCAAUGUCUUGCUGUGCUGAGCUUGUAACCAGCCAUUAGAGAAGACAGUCCGAGAUUAGGGCAAAAGGAUAGCUCCAUCCAAGAGACGAAGGCCAUUCAGUGAGACAUUGCACACAAAUAACCAAUAAGGGUCAGGUUCUUAGUGAGAGAUGGUGAAACAGAAGGGAGCUCCAGUAGCAUGUUUUGGUUCUUGAAGCCUUGCACAUUUCUAGUGGAGUAACAGCAAAAUAACCAGAAGCUUUGAAGAACUGCACUUUAUGUAGUCAGGAUACAUUAUUUCAUUCUAUUCGAUUCCAAUUUGGCCAAUUCAUAUGAUCGACAUUUUUGUCAGGAAAUAAACAGCAAGCAAUGUAUAGUUACUUACCAAAGUGAUACAUGUUUGAGAGAUUCUUUCCAUAUGUUGGGUUCAAGAUAUAGAAAAAUAUUGUUCUUAUGUGGCUUAA

Sequence
(XR_003243148.1):

CAUAAUGCAGGUGCGUGCGGCGCACACACGCACAUGGUUUAUUCGAAGAAGCAAACACACACACACACACACUCAGGCGACGAUGAGUAAUAUAUCAUCAAAGGAUAUAAUGGAGACAUUAAUUUCCUCGAUCAGCUACUGCUGAUCCUCCUUCUUCGAGAAAUAGCUGGCACAGCCACGCCGAAGCCAUGAUUCAUCGCCAUGUUCCUCUUUUAGUGCUUGAUCCUGACGCUGCGGCUUCUUAGGUGUAAGAACAGGGAGAGGCUCCAACUCAGCGAAGGACGGCCGUGACCAGAUGAUCUUCUCAAGGUACGGCGGAAUCGGUGGCUCGACGCAAAGCAUCUCGCCCCCCCCCCUCCCCCCCACGCAUCACCACGAUUUCUGCUUCUCCUCCCGGCAGGCGGCGGCGCUGCCCCCGACCCCCCGACGCAGGCACCGCAUCACCGCAUCUCUCCCGAGCCCCCGACGGAUCACUGCAUCACCGCGGUUUCCGCUAGUCCUCCCGGCAGGCGGCGGCGCUGGUCGCGCCACCCCCGAGCCCCCGGCGCGGUAUUUGUUUUCCCAUAUAUUUUCUGUAAUUAGUUUUUGCCAAACUGAUUGAAAGGUUCUUUAGCGGUUGACAAGGUAUUCCGAGGCCUUCUUGCAGGUAUAUGAACCUCAACUCUAUUGUUUUGUAACAAAAACAAAUCAUUCAAUUGCGACUGUAGUUUAUGAUAGAGUAUCUGCAGAGUUUUCCACUGAUACUGAACAAUGGCACUGCAUAAAUUGUUUCUUUAUGUUAUUUCGAAAGUUUGCAAGUUAUUUCCUCGUUAAUUUCAGUAUUUUGAAAUUUGAAUGGCUGGGUUAUCAGAUCAGUAUCUGAUCCGAUGUGUUCAAUUUGCAUUGUUGUAUUUAAGCCGAAAGAGACCCCCUCGCUGCUGGAGCAAACAACUGCCGGCAGGAAGGUGUGGCAAUAUCUGGCUUGCUAGAUGGAACUGGAGAUUAUGAAGGUGACAGGGUGCUUGUUGGAGAUGUGCCGUGGGGGAUGUUUGUUUCUUCAGUUAAGAGACUGAGAGUACUGAAGACAUCUGACCUAUCUUCAUCUCUUAUAACUUCUGGACGGAAAAGAACAGCAGCUGAGUGUUGACCUUCUUUUUUCGAUCUGCUUUAACACUUUCAGUGACCUGCUGUUCAGAAGAAUAUGAUCCUCUGAGCUUGUAUCAUCGUCUCUUUCUCUCAAUGUCUUGCUGUGCUGAGCUUGUAACCAGCCAUUAGAGAAGACAGUCCGAGAUUAGGGCAAAAGGAUAGCUCCAUCCAAGAGACGAAGGCCAUUCAGUGAGACAUUGCACACAAAUAACCAAUAAGGGUCAGGUUCUUAGUGAGAGAUGGUGAAACAGAAGGGAGCUCCAGUAGCAUGUUUUGGUUCUUGAAGCCUUGCACAUUUCUAGUGGAGUAACAGCAAAAUAACCAGAAGCUUUGAAGAACUGCACUUUAUGUAGUCAGGAUACAUUAUUUCAUUCUAUUCGAUUCCAAUUUGGCCAAUUCAUAUGAUCGACAUUUUUGUCAGGAAAUAAACAGCAAGCAAUGUAUAGUUACUUACCAAAGUGAUACAUGUUUGAGAGAUUCUUUCCAUAUGUUGGGUUCAAGAUAUAGAAAAAUAUUGUUCUUAUGUGGCUUAA

Sequence
(XR_003243149.1):

CAUAAUGCAGGUGCGUGCGGCGCACACACGCACAUGGUUUAUUCGAAGAAGCAAACACACACACACACACACUCAGGCGACGAUGAGUAAUAUAUCAUCAAAGGAUAUAAUGGAGACAUUAAUUUCCUCGAUCAGCUACUGCUGAUCCUCCUUCUUCGAGAAAUAGCUGGCACAGCCACGCCGAAGCCAUGAUUCAUCGCCAUGUUCCUCUUUUAGUGCUUGAUCCUGACGCUGCGGCUUCUUAGGUGGAGAGGCUCCAACUCAGCGAAGGACGGCCGUGACCAGAUGAUCUUCUCAAGGUACGGCGGAAUCGGUGGCUCGACGCAAAGCAUCUCGCCCCCCCCCCUCCCCCCCACGCAUCACCACGAUUUCUGCUUCUCCUCCCGGCAGGCGGCGGCGCUGCCCCCGACCCCCCGACGCAGGCACCGCAUCACCGCAUCUCUCCCGAGCCCCCGACGGAUCACUGCAUCACCGCGGUUUCCGCUAGUCCUCCCGGCAGGCGGCGGCGCUGGUCGCGCCACCCCCGAGCCCCCGGCGCGGUAUUUGUUUUCCCAUAUAUUUUCUGUAAUUAGUUUUUGCCAAACUGAUUGAAAGGUUCUUUAGCGGUUGACAAGGUAUUCCGAGGCCUUCUUGCAGGUAUAUGAACCUCAACUCUAUUGUUUUGUAACAAAAACAAAUCAUUCAAUUGCGACUGUAGUUUAUGAUAGAGUAUCUGCAGAGUUUUCCACUGAUACUGAACAAUGGCACUGCAUAAAUUGUUUCUUUAUGUUAUUUCGAAAGUUUGCAAGUUAUUUCCUCGUUAAUUUCAGUAUUUUGAAAUUUGAAUGGCUGGGUUAUCAGAUCAGUAUCUGAUCCGAUGUGUUCAAUUUGCAUUGUUGUAUUUAAGCCGAAAGAGACCCCCUCGCUGCUGGAGCAAACAACUGCCGGCAGGAAGGUGUGGCAAUAUCUGGCUUGCUAGAUGGAACUGGAGAUUAUGAAGGUGACAGGGUGCUUGUUGGAGAUGUGCCGUGGGGGAUGUUUGUUUCUUCAGUUAAGAGACUGAGAGUACUGAAGACAUCUGACCUAUCUUCAUCUCUUAUAACUUCUGGACGGAAAAGAACAGCAGCUGAGUGUUGACCUUCUUUUUUCGAUCUGCUUUAACACUUUCAGUGACCUGCUGUUCAGAAGAAUAUGAUCCUCUGAGCUUGUAUCAUCGUCUCUUUCUCUCAAUGUCUUGCUGUGCUGAGCUUGUAACCAGCCAUUAGAGAAGACAGUCCGAGAUUAGGGCAAAAGGAUAGCUCCAUCCAAGAGACGAAGGCCAUUCAGUGAGACAUUGCACACAAAUAACCAAUAAGGGUCAGGUUCUUAGUGAGAGAUGGUGAAACAGAAGGGAGCUCCAGUAGCAUGUUUUGGUUCUUGAAGCCUUGCACAUUUCUAGUGGAGUAACAGCAAAAUAACCAGAAGCUUUGAAGAACUGCACUUUAUGUAGUCAGGAUACAUUAUUUCAUUCUAUUCGAUUCCAAUUUGGCCAAUUCAUAUGAUCGACAUUUUUGUCAGGAAAUAAACAGCAAGCAAUGUAUAGUUACUUACCAAAGUGAUACAUGUUUGAGAGAUUCUUUCCAUAUGUUGGGUUCAAGAUAUAGAAAAAUAUUGUUCUUAUGUGGCUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

107

LEP:

21.75%

ME_num:

102

MEP:

20.73%

HE_num:

282

HEP:

57.32%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.86

Avg Expression:

47.35

Tip: OSA-LNC4340871 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.272022604367231.25754098553941e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.213613004575372.02331602886174e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.892693489235545.28372432427414e-17
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.317335596193050.000123565476716087
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.817790971279596.89450700034086e-13
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.458786237519554.0053448158739e-08
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.263297543078522.01827664236102e-07
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.498777507737014.55381386806458e-11
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.290366017726899.86783622407395e-09
10Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.174411346993610.000183437509166236
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.106688344780343.98882068633692e-05