Chr:
Chr6
Start:
9145898
End:
9146848
Strand:
+
Ref_name:
LOC4340730
Sequence
(XR_001547025.2):
CUAAGAAAUGUCAGGAUCAGGAUCGGUUAGUUUGGUAUCAUCUGAGCCAUUGGUUCGACCGGCCGGCGAGGAGUUCCACGCGCCGCCGCCGCCGCUUCUCCUCCAGCCGCCGGCGGGGCCUCCCUUCCUACCCAAGCCUCCGCCGCCGUUCCCAUCUCCUCGUCCUCCGUGCCACCGCCGGCGCCUCUUCCGCUGAAUCCAUCUCCACCUCCUCACCUAUUCGCUAACGCCGCCUCCCAUCCUCUCUUCUCUCCGGGCUCCGGCUAGAUCCAAGUCGGCGUCGAGAUCCAGGGCUCGAAAACCCCUCACCUAUCCAAGGAUUUCAGAUAGAAAAAAUUGUGAAGAUUGAGGAAAACUAUCCUACGGCUCAAUGAGCAGAGCCGGUAUGUCAGACAACCAGUGAAGUCCAUGUCUUAUGCCCAAUGCUUGCACUCAAACCUCAUUCCUUUCCUAGGUUAAAGUAUGCUGUUUUAUUUUGGCCUUGGUGCACAUUUAAGCACCAGAUCUUUUACUCCCAUUUUCAUGUCCGCAAAUUCAUGAACCAGCAGAUUAAUCAUACAUGUACACCAAUUAAAUAUUGUAACAGAAGAGAUAUAUAUUCAUAUUCAACAUAUAUGCAUAGAGGUGAAGAGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.7%
ME_num:
MEP:
68.09%
HE_num:
HEP:
13.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.64
Avg Expression:
5.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.89749449536136 | 0.0104282046133432 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.26119094874066 | 0.000596109802976285 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.47491679370305 | 0.0449499109646209 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.22085786687216 | 0.00131730930933613 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.64419346911405 | 0.000468191418691608 |