Chr:
Chr6
Start:
5088059
End:
5097895
Strand:
-
Ref_name:
LOC4340411
Sequence
(XR_001546967.2):
CACCAUAUAGACGUCUAUAUCAGUGUAUGCACAACCUUUGAGCACCGGGUCUUCUGUAGAAUUUCUACACACAAACACCUGGGCAAACUCUUGAGAGAGAGAGAGAGAGAGCGUGUGUUCAUGCAAUGGCACCGGUGAUCAAGCUGCAGGCGUAUGGAAAGAGAGGAAAUGAGCAAGCGUUUAUGGACUCUGGAGCUCAGGAUGCAGUGCUACAGGAAAGCUAGGAGAAAUCGGAGAUAUAUAUGGCAGUUGCUGGAGUGGGAGAUCGACGCACUGGAAAGGUUACAGAGAGGCUUACAGUUUGCUCGGCAAACCGGAGGUGAUCGCUGUUAGUCGGAGUGGCCAUGGUCGGAGUACUCCUAGUCCUAGAGGUAGCAGGUUGAUCGAGUUCCAGCUUCAGCGAAGCGUAUGCAGUGCAAAAACAGAUCAGCGGACUGCUUCACAGCAAGGAAAUAGAGAAGGAGUGGAUCAGCAGUGACGAAUGGGUGGCACUGAAUUGAGGGAUUCCAUGGAAGAUGGAGCAGUCUCCAGCAAUGAAAUUCCCUUUCAUCUUUACAGAUGAAAGUAACAGAGCAUUGGUUGGACAGAGAGCCUCUCUCAACUGGUCAUGGAGACUCUCGUAUGGAGGUAAUGGACUAAUGGCCAGGACGCCUGAUUCUGUCUACUUCCAAUCUUCCAGGAAGGAUUCUGUCUAUUUUUCCGGGGCAGUUCAAGCAGGAAGAGAAACGGGCUAAAUUCAAGAGGAACUUACAAAAACUAGCAGGAAUCAGCUUCAAUUUUCGCUGCGUCUCUACUUUGAGUAAUCUGUCUGCAGCUUCGGAAACUUCAAACGCGAUUUGUACCAACCAACCACGCUCACCCCAGCCCAGCUCGCUUGACCGCUAACGCCGAGGAAUUUGGCAUACAGCGCCAUCAACGAGUGGCUCGGUGCGGAGGCGUGCGGCGUCAUGGUCGCCCGGUCGUCGUCACGCAGCAGCACAUCCACUUCGUGUCUCCGAGGCUCGGACAGGUCGGUACUGGGCGGUAGGUCCAAUGUGCCCAACUUUUCAACUGCUUUUCUACCAGCCCACUCCAAUCAGACCACACUUGUUCAGGUCAAUCAAUGCCCCAUGCAAAGACUGCCCUGAGAAAUGAGACUUUUUAAGGGGGUGUUUGCGAGCUCUCAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.06%
ME_num:
MEP:
39.63%
HE_num:
HEP:
44.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.74
Avg Expression:
25.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.62463146108398 | 1.32777199786245e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.53816557576626 | 4.49359580280734e-38 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.46445723609323 | 3.43701696227948e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.94103585587793 | 3.53505292559382e-29 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.49315715562081 | 2.30143475877555e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.38073186406261 | 3.91937470299678e-48 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.58062439229947 | 0.0191427504040637 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.68901367338511 | 7.51602902391839e-09 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.35723819477847 | 1.86253736723917e-17 |
| 10 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.88124072935959 | 4.87601442574119e-11 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.45412049474217 | 0.0423052227468035 |
| 12 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.95585176252101 | 1.62662271750603e-17 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.6057311360701 | 0.000350022218691191 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.24301558901812 | 0.0356177744198185 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.09935092029916 | 1.20617851374596e-166 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.33823146648266 | 8.33983618507725e-38 |
| 17 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 8.31558938280616 | 3.26679882626732e-07 |
| 18 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.41729325173365 | 0.000764828313305132 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.51481696007371 | 0.000101908385891169 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.19896769298528 | 0.0409595275233608 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.88192689600124 | 0.00485362170550502 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.84636986553228 | 0.015902080860937 |
| 23 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.05232645098195 | 6.17816086289774e-13 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.18917340650851 | 7.88598134447087e-06 |
| 25 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.05225594114785 | 6.31525245029568e-13 |
| 26 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.05217878135198 | 6.28682920820203e-13 |
| 27 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.84661164748033 | 2.3494404741486e-13 |
| 28 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.39336592994212 | 2.35045984054531e-10 |
| 29 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.51461472597645 | 8.78978171530182e-14 |