Chr:
Chr5
Start:
27935350
End:
27935985
Strand:
+
Ref_name:
LOC4339602
Sequence
(XR_001545718.2):
AUCAGGGAGUACGUGAACGCCAUCAGCAAGCGAUCAAACACUGAUCGAACCCCAGUAGCUGAAGCUAACGACGAUCGAGAAUAAGAAGAUCGACGACGAUGAGGCCUCGUGUUGUCCAGGUAUGGUGCCUCAUUGUGCUCGCCAUGAUCGUCGUCUUCGCGGCGACGCCGGCAAUGGCGGCCCGCGACGGCCGCCGGCUUCACCCGCCGGCGCCGGCGGCUCGCGGCGGCGGGGCGUGGAACAGGGUGAGUGUGACGGCGGAGAUCGUCGGCGGCGGCGGCAAGUGGGAAGUCCCCGGCGGACCUGACCCGCAGCACCACCACUAAUCUGAUGAUAUAAUCGUUUUCGGAGGAUGUAACUCACGGUGACGUCGACUUAGUUUGGUUUGGUCGGACUCAGACUGCAUGAGUGAAUGAACGAAUAAUAAAUCGGCAAUGUUUGGAGAAUCCAUGCAUAUGCUGCAGGAAUAAUGCAUGGAGAAUCUUUAUGUAAUCCCUUGUGGUUUCCUAUGUGCUUUGUGAUCAUUAUUUUACUUCCUGGGUGAUGUCGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.7%
ME_num:
MEP:
15.85%
HE_num:
HEP:
15.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.97
Avg Expression:
79.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Azucena // root // control--/--Azucena // root // Al | -1.06412409387331 | 7.36134248947247e-06 |
| 2 | AzuNIL // root // control--/--AzuNIL // root // Al | -1.11724328981517 | 0.00942158304418368 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -4.89000603222224 | 0.0253614512057882 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 2.92187173279286 | 3.3550848001011e-11 |
| 5 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.37601171812004 | 0.0298412107460123 |
| 6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 3.10065054609144 | 2.60843893953271e-06 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.48739136735712 | 1.32985113959614e-44 |