Chr:
Chr5
Start:
24194512
End:
24202656
Strand:
-
Ref_name:
LOC4339180
Sequence
(XR_001546186.2):
GGCCUCAUCAUUCUACUUCUCCGGGGGAAAUUCUCGGCUUGCGGCGGCUUCGGCGGCGGCGGCGCCGCCGCCGCGGCGCGGGGCUACCGCCGGUUCGUAUCUCCGCGAACCGGAGACGUGGAAGGGGGAGGAGAGAUAUAGCGAGUGUGUGUGUGGAGCGAAUCUACAACGCGUCCUUCGUUUUUUUUGGCUAACAACUUCUAUCAAGGGCGUUGCCUCGCCGUUGUUUCUUCCUUAAGGAAUCGCUGGUGAUUAUCCAUUCCCGUAUCACUGCAAACAGCUGCUACUGUCCCUUCCUGUAUCUCAUUCCCUGAAUUGAAGGUGGUACAUACAGAAGAGCCCUAACUAUAGGCAAAGGAGGAAAGAGGCAUCUGUCGCACCGCGCGCCUCUGCUGCUCAAAAGGCUAAAAUCAUGCGAUUUUGUGCUUAGUCCAGUAAACAUUGGGAAGUUAGAAGGUGGUCGUAUUGAGCGGAUUCACCGACAAGUUCUUCCUUGUCAUUAUAUGGCUAUUGGUUUGUAUAAUAGUAUGUAUUUUCAAGACUUGAAGUGCACAUUUUCAAAAUUGUUCAGAAGUCCUUUUGAGGAAGCGGUGGCCCCAGUUGUACUCCAAGCUUCUUCUUUUUUUCCUACAAAUGUUCAGAAACCACAUUAUGCAUACUCAAGUAGUCUACCUGACCCAACUCACCAGUUCAGUUAAAUGAAUAGUGGAGUAGUAGAAAUGUUUCCAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.67%
ME_num:
MEP:
4.07%
HE_num:
HEP:
91.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.62
Avg Expression:
28.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.38315981870836 | 5.41985671533744e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.05480990380981 | 2.6639466724551e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.28196302554441 | 7.16765238396171e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.91220372233382 | 6.39667185675627e-19 |