Chr:
Chr5
Start:
21315823
End:
21318550
Strand:
-
Ref_name:
LOC4338897
Sequence
(XR_003242611.1):
AACUGAUCCACAUGGUGUUCAAGUGAUUACACAAGUGUAUAGAUUGUUUUAAAAGUUGGGUUCGAUAGAUAUGUAGAAUUCCAUGCCGCCAUCGCUGAAGCCGCGCAGGCAAGCCUCAAUGUCUGCACCUAGGCCUUCAGCGGGUGCAGCUACUGUGUGCUGCGGAUGGUACCCUUCCAUUACAGUGAGGAGGUCUUCCAGAUCAGCUAUCACGGUGGUUCCUUGGUGUGCCCAUGGGCAGCACACCAACUGUUUGAUGAAAUGCAUGAUCGAGGUGCACUCCUGUUACUGUUUUAAUCCUUAUUAUUAUCUCAUAUUUACUCUAUUUUUCACUGUAUGUUGUGAUUUGAAGCUCUGCCUAUGUAAACUAAAAUUGAAUUGUUCCUUGGUCUCGAAUACUUCAUAUGGUGCAGACAAAUAUUUCAUUUUUGCAGGGUAGAACACCCUAUUAUUUUAGUGUAUAUAUUUACUAUGAGAUACUUCACUUUUUAAUGACUAUUGGAGUCACGUCAGUAUGUUAAUAGUGAUAUAGAUAUGCUAACCUGUCCAAUUUUACCUGAUAUUCCCAACACAAUAGCUUUGUUUCUUGACUGAGAUUUAUUUGUCUCCUGUUUCUAUUGCAGUUAAAAGUUUGCAGAUAAAUUCAUAUUUCGUAAUCGAUCAGCAAGCCUGGACAGUGUUCCAAGGGACAUGUGGACUCGGCUGCAGUAUAUCUAUUUGUUUGAUCUUUAGUUGCAUAUAAAAUCCUUUUGAGAUUUAUUUAUUUUAACCCAGAAAAAAAAGGAGAUUUAUUUAUUUUAAGAUAUGUCCCUUUAUUGUUCAACUGCAACUGAUUUGGAAGUCCAUACAUAACAAGAUGUAACAGAUGGGCCAUUAAGAACUCUCUGAGUCCGUUCUAUCAAAUAUAAAGUAAGGUGACUUGCCCUUCCCAGUAUUACCUUAUUACUGUUAUUUGCCUUCUUUUAUUUGAUAAAAAGGUCAUGUGAAUCAUGGAGUGGAAUAUUAAAAAGCCACUGCAUAUAGCAUUGCUUUAUCUGGAUGAGUUAUCAUCAAGCAUCAUCAUCAUCCUGAUAUUUCUAAUCAGCGUUGCACAUCUAUUUUAUCAAGCUCCUCUGUUACUUUCUAGCUACAUGAAGUGGAGUUACUAAUAUAUUGCUCUAUGAAGUGAAAGUUUCUUUCUGCUCAAAAAACUACUCCUAUAAUACAAUGCCUAAAUAUGCCAAUUUUCUACCACUACUGAAUCUGAAGUUUAACUAAUGUGCUUCAUUUCCAUGUUAGCCUUUAUAUGGUUAGCCCACCAGUAUUAAGAUUAACAAAUUGCUUGUUAUAUUUGUGAGAACUGAAACCGCUUCUUUUGAAAUGGGCUCUAAUUGUUGAAGUCUAUUUUUUUUUCAUGUUUUUUCAUGGUUUGAGAUGAAUUCUUAACUGACCAGGAAACAAAAUAUUGAUAUCUUUGGAAUUACUUGCUUUGAUUUUUAAAUACAUUUUGUCUUGUAACUUUAUUUGUUUUUUGUUAGUGUUGAACGAUUGCAAACGAAUGGUGCAUCACUUGCUGGUCAAGUUCCUCAGGAGUAUAACUUUGUCAUGUUUCCGAAAUUGUAUCAGGAUUAGCUAUGAAUUGGUCUUUGCUCUUGUGAUUAUUGUAGAGUUACACUUCAAGCUCGUGGAUGCCGCUGGUCCAUAUUCUGUGAUUAACAACAUGAUUAAAAAAAGUAAGGUUACUUCGAUUAUGUACUGCUGCUUGAACUUCAUUUACUAUAGGUUUACAGGUACCUGUGGAUUGAGAGGGUCACUGGGUCAUCUUUUGAAGUUGGUUUGGAUGACCUGAAGCUAUCAGGGAACAAUGAUCAGAUUCUUCAGAAGAAGACUCUUCGAGGAUAGCAUCAUUGGAACCUGCUAAGCACUUUUACAUCCUUGACUUCAAAGACUGGUUCCGCCGACAUACCAACUCGAUUUGAUUUUUGCUCUAAUUUGCUCAAUGUGGUUGAGUUGUAUUGUUCUUCUGGAGUUUUUUUUUUUUCAUUCGAUCUGUGUUGUGCUCUUUCUAUCUACUGGUCAGACCGAACGCCUAGUGCAAGAUGAGCUGCAUCACUUGCUAUGGCGGGCCUGAUGGUUGCAUCACCUGGUGACAUGUUUAUGCCUGCAAUUUAAUGUAAUAGUUCUCUAUCUUUUUUUUUGUUAUUUGGACAUAUGUUAUCUUCAAAUAUGUAUUAAAGUGAUUGGGUAUAAUGGUUGAUGCUCUUGAAUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
17.68%
HE_num:
HEP:
81.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.50
Avg Expression:
18.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.0051074875227 | 1.01162854527642e-06 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.19089429383475 | 5.17601868129729e-07 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.53521109282737 | 1.2040316861989e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.14600930633448 | 4.07719287958266e-09 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.65808707772919 | 3.52755259776691e-07 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.6581836239546 | 3.81124524023064e-07 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.65827346289739 | 3.56862842710704e-07 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.1029662571511 | 2.30793094997878e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.48860622198645 | 1.52947458032819e-13 |