RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4338747

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

19698885

End:

19704432

Strand:

+

Ref_name:

LOC4338747

Sequence
(XR_001546001.2):

UAAUAGUACCACACAUUAUACUUGUAAGGGCAGUAACAGUGCAAGGCACGCAUAGCGCGCUUCUAGCCCAUUUGUGCGAUAAAAUUGGCCCGAAGGCCAGUAGGCCACACACCCCACAGUGCUCGUGACCCACAAUACGCUAUCAAGUCGGAACUCCCAGUCGAACGAAAACAGAGUUAAUUUUCCCCACCUGCCCCUUCAUGCUUAUCCUCUACACAGAAAAAAAUCCCGUCACUUCUCCCCAUCUCCGCGCCGCUCCCCCGCCCCACCCACCCCCCUCCGCUAAAAAAAAUCCGCAGCUUCUCCUCCUCAUUCACCACACCACGCGCUUCUCCUCCCAGAUCUGCCGCUUCUCUCCCCAAAUUUGACACUUCUCCUCCCAAAUCCACCGCACCGUUUCUCCCAAUCUGCGCCACUUCUCCUCGCCCAUCCACUGCACCGCUUCUCCCCCAAAUCCAAGCGCGGGAGGCAAGAAUCGGUGGGGUGGGAGGGUGAUUUUGGGGAUUCACUUUUCGGGGCGGCGCGAGGAAGCGACGAAUCGGAGCGACGACCUCCACGUUGCAGGGGCGGAGGGGGUUUCUUGCGCUGCGCGCCCUCGUUGCAACGAAGAAACUCGUCUCCCAGAUAAGGGGCGAGCGGCUAAGCAGAGGCGCGAGCCUCGUCGACACGUAAGCGAGUCCAAUAUGGCAGGUGAAGGUAACAUGCCAUGUACACGCACUGGGAAGGGCCUAAAGGGGCUAGCAAUAAUACGUGAGUACUAGGGAUUGAUGAACCAUGGUGAAGACUCCAAUAAGGUACAAAGGUGGAAUUUUGGAAAUGAUGGCGCCGACAAGGUGUUCAAAUGUUCGAUGUGAUAUGGUGAAAAUUUUUGGAGUGGGACCUAACAAGGCCUGAGCUGAUAAAGUAUCGAGGUAACAUCGUGGAUGAGGCUAUGCCAACAAGAUACCAAGGAUGAAUUGAGAGGGCAACAACGUCGACAAGGUAUCACAUACUUGAACCAUGGAUACUUGAUUGGGACGAAGACACGAGGAUCUGGUAUGCAUGCUCGUGGCAGAUGAGGCAAAGUAAAGGUGUCUCAAGGAAGCCGCGAAUACGGAUCGAUCUCCUAUAAUUUAUACCAUCCCAAAAUUGAUAUGCCUUACAUUAGCAGUUCUUAAAAUAAACCGAACACAAAAGACAGAAACAUAUAUAUUCAUCCAAAUAUUUGGACACGAUAUGAAACAAACAUGAACAUUUACAUGAUACUAAUUUGAGAACAUCUCUGUUUUAUACUGUGCAGUGAUUUUUUUCCCCGAUGGUUGGUGCGAAGCAAUUUUUCUCAAAAGGAAAUGAAACGAUUGAAAGCUUUCCUUCCUGACGCGUGUGGCACGAUUUUAUCCGCCGGUUUAUUUUCCCAGGAAAGAAUUCAACAUUUCAACUUCUGGAGGACUCCGACCGCCGUGCCUCUUCAUCGUCGGUGCCCUAGGUUCUCCACGCCCAUUGCCCAUUACUAAUCCGGCACUGCUAGCUCAGGUAUACGCCACGAAACCCACUCCUACGCCAAGGUAUCCACCACUCGCGCGCGGCGCGCGCACGCUCGCCGGCGACGGCAGCGCGGGGUGCUCCUUGUGUUGGGCGCGCUCGGCGAAGGUGUGGCGGUGUGGCGCAUGGAGGUUCAGCGGGAGACCGGGCGUUCCUGGCACACGCGGCCGUGUUUGGCGGAGCUCGCGCGCGCUCAUGGCGUUGUCAUGGGGGUGGUUUUCUCGUGUUCAGGUUCAGGCACGAAGGGGGCGCCGCGUAACUCGCCGUGAAGGUGUUCGAUCAGAUGCCCCUCUCAGGGCGAAGUUUUGUGAAGUUGACACUUCGGCAGAUUUGAUUAAUAACAAGACAAAUGCAGCUGUUAGAAGGCCACGGUUCAUCAGAGUUCUGCUCCCUGGAUCCUUCGCAAAGAUGGUCCACAGAUGCUUGUAUACUACUACAUGUUCUGCCGUUCUGAAUUUCGUAGCGAAUUCUUAACAAGUUUGCAAGGACAGUGCCGGUCAAAUUGGCCAUGGUUUUCAGCCUCGUUGGCAAUUUUUGGCACGUUAAGCUGUAUUGAGGAUUUGAGAUCUACUCUUCUUUUUAAGAGCUAUUGAGAUCUACUUUAGGGAGUGGCAGAACAGGGUUUGUGAGGGCUCGUGAUUUUUCUGAGGGCAAACUUCUGCUGCUGUUCAGAUACGAAGAUAUCGUCAAAUGCUCGACCAAAAACAGAAGAUAAUUCAGAUGACGAACUACCUCAACUCUGAAUAAAAUUUGGCCGCCUUCCUUCUUUAGCCCGGCGAGAAAAAGGAUGGAAAGGGCCUGAAUGACAGGCUAUGGAAGAGAAAAAAGUUGGGAAGUAGGAUAAGUCGGAGGAACAGUGCAGAUUGCACUGCAAGUCUUUGAGAUGAGAAUGACCCAAGAGACAGGCCACUGAAAAAGAUGAAGAAGCGGCUUUGAAGUUUUGUGGAUCAGUCAAAAUGGGAAUUGCGAGAACGGAACUGCAAGUCAUGCAGGAGACAAGAAUCCAAAAAAAGCCACAUUCAAAGUCUGAUCACGAUGAGUGAAGUGCUUAUGGGCUUAGCCACAGAUUUGAGCACUCCGUUUCAUGACUUGAUGCAUGCGCUUCCACGGGCUUCCCACAAGCUGCACAAUCACACUAAAAACGAAGAGCCAUUUCACAACAUGGAAGAAGGCGAUUUUGGUCACAGCCCAUAAACUCCCGUUGCUGACAAACAAACUUCAGGCUUCAUGUAUUCACAGCAGUACAAAGCAACACGCCUACAAUUUCUAUCCAAAAUGGCACAAUUUCAGCUCAUCAGAUUAAGUUAAGGCUCUAAAUCGAUCCUUCCCUCA

Sequence
(XR_003242413.1):

CAUCUCCGCGCCGCUCCCCCGCCCCACCCACCCCCCUCCGCUAAAAAAAAUCCGCAGCUUCUCCUCCUCAUUCACCACACCACGCGCUUCUCCUCCCAGAUCUGCCGCUUCUCUCCCCAAAUUUGACACUUCUCCUCCCAAAUCCACCGCACCGUUUCUCCCAAUCUGCGCCACUUCUCCUCGCCCAUCCACUGCACCGCUUCUCCCCCAAAUCCAAGCGCGGGAGGCAAGAAUCGGUGGGGUGGGAGGGUGAUUUUGGGGAUUCACUUUUCGGGGCGGCGCGAGGAAGCGACGAAUCGGAGCGACGACCUCCACGUUGCAGGGGCGGAGGGGGUUUCUUGCGCUGCGCGCCCUCGUUGCAACGAAGAAACUCGUCUCCCAGAUAAGGGGCGAGCGGCUAAGCAGAGGCGCGAGCCUCGUCGACACGUAAGCGAGUCCAAUAUGGCAGGUGAAGGUAACAUGCCAUGUACACGCACUGGGAAGGGCCUAAAGGGGCUAGCAAUAAUACGUGAGUACUAGGGAUUGAUGAACCAUGGUGAAGACUCCAAUAAGGUACAAAGGUGGAAUUUUGGAAAUGAUGGCGCCGACAAGGUGUUCAAAUGUUCGAUGUGAUAUGGUGAAAAUUUUUGGAGUGGGACCUAACAAGGCCUGAGCUGAUAAAGUAUCGAGGUAACAUCGUGGAUGAGGCUAUGCCAACAAGAUACCAAGGAUGAAUUGAGAGGGCAACAACGUCGACAAGUGAUUUUUUUCCCCGAUGGUUGGUGCGAAGCAAUUUUUCUCAAAAGGAAAUGAAACGAUUGAAAGCUUUCCUUCCUGACGCGUGUGGCACGAUUUUAUCCGCCGGUUUAUUUUCCCAGGAAAGAAUUCAACAUUUCAACUUCUGGAGGACUCCGACCGCCGUGCCUCUUCAUCGUCGGUGCCCUAGGUUCUCCACGCCCAUUGCCCAUUACUAAUCCGGCACUGCUAGCUCAGGUAUACGCCACGAAACCCACUCCUACGCCAAGGUAUCCACCACUCGCGCGCGGCGCGCGCACGCUCGCCGGCGACGGCAGCGCGGGGUGCUCCUUGUGUUGGGCGCGCUCGGCGAAGGUGUGGCGGUGUGGCGCAUGGAGGUUCAGCGGGAGACCGGGCGUUCCUGGCACACGCGGCCGUGUUUGGCGGAGCUCGCGCGCGCUCAUGGCGUUGUCAUGGGGGUGGUUUUCUCGUGUUCAGGUUCAGGCACGAAGGGGGCGCCGCGUAACUCGCCGUGAAGGUGUUCGAUCAGAUGCCCCUCUCAGGGCGAAGUUUUGUGAAGUUGACACUUCGGCAGAUUUGAUUAAUAACAAGACAAAUGCAGCUGUUAGAAGGCCACGGUUCAUCAGAGUUCUGCUCCCUGGAUCCUUCGCAAAGAUGGUCCACAGAUGCUUGUAUACUACUACAUGUUCUGCCGUUCUGAAUUUCGUAGCGAAUUCUUAACAAGUUUGCAAGGACAGUGCCGGUCAAAUUGGCCAUGGUUUUCAGCCUCGUUGGCAAUUUUUGGCACGUUAAGCUGUAUUGAGGAUUUGAGAUCUACUCUUCUUUUUAAGAGCUAUUGAGAUCUACUUUAGGGAGUGGCAGAACAGGGUUUGUGAGGGCUCGUGAUUUUUCUGAGGGCAAACUUCUGCUGCUGUUCAGAUACGAAGAUAUCGUCAAAUGCUCGACCAAAAACAGAAGAUAAUUCAGAUGACGAACUACCUCAACUCUGAAUAAAAUUUGGCCGCCUUCCUUCUUUAGCCCGGCGAGAAAAAGGAUGGAAAGGGCCUGAAUGACAGGCUAUGGAAGAGAAAAAAGUUGGGAAGUAGGAUAAGUCGGAGGAACAGUGCAGAUUGCACUGCAAGUCUUUGAGAUGAGAAUGACCCAAGAGACAGGCCACUGAAAAAGAUGAAGAAGCGGCUUUGAAGUUUUGUGGAUCAGUCAAAAUGGGAAUUGCGAGAACGGAACUGCAAGUCAUGCAGGAGACAAGAAUCCAAAAAAAGCCACAUUCAAAGUCUGAUCACGAUGAGUGAAGUGCUUAUGGGCUUAGCCACAGAUUUGAGCACUCCGUUUCAUGACUUGAUGCAUGCGCUUCCACGGGCUUCCCACAAGCUGCACAAUCACACUAAAAACGAAGAGCCAUUUCACAACAUGGAAGAAGGCGAUUUUGGUCACAGCCCAUAAACUCCCGUUGCUGACAAACAAACUUCAGGCUUCAUGUAUUCACAGCAGUACAAAGCAACACGCCUACAAUUUCUAUCCAAAAUGGCACAAUUUCAGCUCAUCAGAUUAAGUUAAGGCUCUAAAUCGAUCCUUCCCUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

355

LEP:

72.15%

ME_num:

119

MEP:

24.19%

HE_num:

17

HEP:

3.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosprem

Tau :

0.91

Avg Expression:

7.34

Tip: OSA-LNC4338747 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-2.263146597293142.33044723517242e-21
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.141286286714264.84487372121688e-24
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-3.129683254527072.79999837242391e-37
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-3.584439691342958.31689409399535e-22
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-3.05720514863054.80726709357888e-27
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-3.959264157519451.74569926310746e-30
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.152866427138712.27896892880124e-27
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.182604551549522.54856447987021e-39
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.703897777634711.25293931028033e-38
10Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"2.321761219869940.0155335053325182
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-2.824366077540491.46298670937992e-25
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-3.459267705693271.59450765224318e-53