Chr:
Chr5
Start:
14879414
End:
14881915
Strand:
+
Ref_name:
LOC4338408
Sequence
(XR_001545755.2):
UCUUGACACCUGCUUUGUACGGUUAUACCCCGUAUUUUUAGGAUCUGGGAGCGGCGUCGGCGGUGGCGGUGUCCUCCAGCGGCGGGCGGCGGGCGACGGGCGAAAUCGGCCAGCGACAGGUGGAAUCGGCUGGAGAGGUAGCGCUCGUGGGUCGCCGCUGCAGUCGCCGGAGAUCGGAGCCGGGCAGAGGCGAGCGGACAAGAACGGGCGACGCUAGGAUGGAGGAGGAGAGCCCUGCCCCGGCGUCGGCUCAGGCUUCUGCUCCCUCUCCCACUCCCGCCGCCGCUGUUGGUGGUGUAGCGCCUCUGGAUCCAGCGGGAAGGUGAAGCGCAUCAUGAAGACGCCCUAUCAGUUGGAGGUUCUCAAGAGGACUUACACAGUUAGGGCUCACAGACAAGCAGCUGCAGAUGUGGUUCUGCCACCGGCGGUUGAAGGACCGUAAACCACCGCCGAAGCGGCAGCAGCUGGAGGAGGAGGUUCAUGUGCCAGUUAUGGCGCCGCCUCCUGUGCUGCCACCACCGCUGCCACACAGCGAGCUAACAAUGGCUCCUGGUGGGAUGUAUGGCGAGCAGUUGCUGCCCUCCUCUUCCCGUAGAGGAACUGGCCGGCCAUCAGCCAUUCUUGAUAUGUCUGAUCUUCAGUGCCUCCCCCUACUCACGAGCCACGGUUAACAAAGCAUAUUGAGCACAUAAUAGAUUUGAUAACCAAGAUGGAUUGGAUUGUAUUUCUGAACUACCGGACUACAUAUGGUCCCAUUCAACAUGCUACGGUUUAUCGGAAUGUUUUGACAGAACAUACUUUUUCAGGCCUAAUAUUCUUAAUUUUACUUGUGGCCAGCGACAUUGAAGCUGAUUGAUUGUAUUCCUCAUCAAGGGAAAGCAUGGCAGAUUGUACAGCUUGAUGCACUUGACGAGAGGUACUCAUCCACUUGAUUUCUGCGUCCUCAGCGGUGAUUAUUUCCAUCUGUGCACAGGUGAGAUCUGGCUGCCUAUUUCGUUUUGUGUUAUUGGAAGCACAUCGAUCACAACUCUACAAAUUUCUCAUGUGUGUUCUGGGCAGGCUUGUUAGCUGAUAUGCACACCUCUGCUCAUCUUAAUGAUGUAACAAAUGUCGAUUUAUAUCACUAGUGCUUGGCUUUUGGGCUAUCGGUUCAUCAGUCUUUGGACAACAUUUAAUUGAUAAGCCAACAGUUUCUUAAAUAUUCUUUUUGAUGUGCUUGUAGUUUCUUAGAUUUUCUAGUUGAUAUCUUGAUUGGCUAAUAGUUCUAUGAAUGUUUUUGGUUCACACAGACAUGCGCAGAAGUGACAAUUUUUCAAUCUGUCUAGUGGCUGCUCUCAACUCUCAUGUUGAUUUGUAACGGUUAUUGCUGAAUGAAAGAUGGACUGAGAAUUUUCGUUCAGAGAAAUUAUAUUCAGAGCUCUGAGUGUCAUGUUCUCUCGGUUUGCAAGUGCAGCCCUUUUCAUAAUUUUUUAGUUUGGUCGGCUGGACAAUUAGAUACUCACAGUUGGGUCAAAAGCUCUGAAAUGUUAUGAAAAUUAUGGGGCUCAUACACAUAUGAUGCUCUAAAUGUCAAUUAGAAAUAUGUCAUUUGCAAAUUUGUGUGUUGUAUUCUCAGAAAUCUGUUCCCAUCUGAAUUUCCAUUUGUUCACUCAUAUUGGUGAGCGUUUUGACCAAAAGAGUUCCUUUAUGUAUUUGUUAUUGGCCUUUUCAAUUCACUGAAUUGCGAAAUGUUCGGUUGCAGGGACUAAGUCAAGCCCUGGAGAGAUGAUUCGGCUAAGGUGGGACACCACCGAUAGCGAGGAGGUCGUUCGCACCCGCAUCCCCUCAAGCACGCCGGGUCAGCACAAGGCGCGCGUGCUCCCGGCGGCUGGCCGCGGAUGGCCAGAUACAAGAGGACCACCGGCCAGCCCUCCAUGGCCGACCCGUUGCCCUCUUUCACUCCAUACCUAUCCACCACGCCGCCAUCGCCUCCGACAACCAUCGGUGUAAUACUAACUUGGUUACUACGAGAAACUCUGUGACAAGACCAAUAUGUUAUGUUGAGAAUCAUUGGUGUAAUUUAGUUACUAAGAGAAAAUGUUAAGAACCAUUAGUUUAAUAGUAACUUGGUUACUACAAAAAAUUUUGUGGCAAGAUCAAUAAGUUAUGUUGAGAAUCAUCGGUACCAUAGUAAUUUAUUUACUAAGAAA
Sequence
(XR_001545756.2):
UCUUGACACCUGCUUUGUACGGUUAUACCCCGUAUUUUUAGGAUCUGGGAGCGGCGUCGGCGGUGGCGGUGUCCUCCAGCGGCGGGCGGCGGGCGACGGGCGAAAUCGGCCAGCGACAGGUGGAAUCGGCUGGAGAGGUAGCGCUCGUGGGUCGCCGCUGCAGUCGCCGGAGAUCGGAGCCGGGCAGAGGCGAGCGGACAAGAACGGGCGACGCUAGGAUGGAGGAGGAGAGCCCUGCCCCGGCGUCGGCUCAGGCUUCUGCUCCCUCUCCCACUCCCGCCGCCGCUGUUGGUGGUGUAGCGCCUCUGGAUCCAGCGGGAAGGUGAAGCGCAUCAUGAAGACGCCCUAUCAGUUGGAGGUUCUCAAGAGGACUUACACAGGGCUCACAGACAAGCAGCUGCAGAUGUGGUUCUGCCACCGGCGGUUGAAGGACCGUAAACCACCGCCGAAGCGGCAGCAGCUGGAGGAGGAGGUUCAUGUGCCAGUUAUGGCGCCGCCUCCUGUGCUGCCACCACCGCUGCCACACAGCGAGCUAACAAUGGCUCCUGGUGGGAUGUAUGGCGAGCAGUUGCUGCCCUCCUCUUCCCGUAGAGGAACUGGCCGGCCAUCAGCCAUUCUUGAUAUGUCUGAUCUUCAGUGCCUCCCCCUACUCACGAGCCACGGUUAACAAAGCAUAUUGAGCACAUAAUAGAUUUGAUAACCAAGAUGGAUUGGAUUGUAUUUCUGAACUACCGGACUACAUAUGGUCCCAUUCAACAUGCUACGGUUUAUCGGAAUGUUUUGACAGAACAUACUUUUUCAGGCCUAAUAUUCUUAAUUUUACUUGUGGCCAGCGACAUUGAAGCUGAUUGAUUGUAUUCCUCAUCAAGGGAAAGCAUGGCAGAUUGUACAGCUUGAUGCACUUGACGAGAGGUACUCAUCCACUUGAUUUCUGCGUCCUCAGCGGUGAUUAUUUCCAUCUGUGCACAGGUGAGAUCUGGCUGCCUAUUUCGUUUUGUGUUAUUGGAAGCACAUCGAUCACAACUCUACAAAUUUCUCAUGUGUGUUCUGGGCAGGCUUGUUAGCUGAUAUGCACACCUCUGCUCAUCUUAAUGAUGUAACAAAUGUCGAUUUAUAUCACUAGUGCUUGGCUUUUGGGCUAUCGGUUCAUCAGUCUUUGGACAACAUUUAAUUGAUAAGCCAACAGUUUCUUAAAUAUUCUUUUUGAUGUGCUUGUAGUUUCUUAGAUUUUCUAGUUGAUAUCUUGAUUGGCUAAUAGUUCUAUGAAUGUUUUUGGUUCACACAGACAUGCGCAGAAGUGACAAUUUUUCAAUCUGUCUAGUGGCUGCUCUCAACUCUCAUGUUGAUUUGUAACGGUUAUUGCUGAAUGAAAGAUGGACUGAGAAUUUUCGUUCAGAGAAAUUAUAUUCAGAGCUCUGAGUGUCAUGUUCUCUCGGUUUGCAAGUGCAGCCCUUUUCAUAAUUUUUUAGUUUGGUCGGCUGGACAAUUAGAUACUCACAGUUGGGUCAAAAGCUCUGAAAUGUUAUGAAAAUUAUGGGGCUCAUACACAUAUGAUGCUCUAAAUGUCAAUUAGAAAUAUGUCAUUUGCAAAUUUGUGUGUUGUAUUCUCAGAAAUCUGUUCCCAUCUGAAUUUCCAUUUGUUCACUCAUAUUGGUGAGCGUUUUGACCAAAAGAGUUCCUUUAUGUAUUUGUUAUUGGCCUUUUCAAUUCACUGAAUUGCGAAAUGUUCGGUUGCAGGGACUAAGUCAAGCCCUGGAGAGAUGAUUCGGCUAAGGUGGGACACCACCGAUAGCGAGGAGGUCGUUCGCACCCGCAUCCCCUCAAGCACGCCGGGUCAGCACAAGGCGCGCGUGCUCCCGGCGGCUGGCCGCGGAUGGCCAGAUACAAGAGGACCACCGGCCAGCCCUCCAUGGCCGACCCGUUGCCCUCUUUCACUCCAUACCUAUCCACCACGCCGCCAUCGCCUCCGACAACCAUCGGUGUAAUACUAACUUGGUUACUACGAGAAACUCUGUGACAAGACCAAUAUGUUAUGUUGAGAAUCAUUGGUGUAAUUUAGUUACUAAGAGAAAAUGUUAAGAACCAUUAGUUUAAUAGUAACUUGGUUACUACAAAAAAUUUUGUGGCAAGAUCAAUAAGUUAUGUUGAGAAUCAUCGGUACCAUAGUAAUUUAUUUACUAAGAAA
Sequence
(XR_001545757.2):
UUUCUUGACACCUGCUUUGUACGGUUAUACCCCGUAUUUUUAGGAUCUGGGAGCGGCGUCGGCGGUGGCGGUGUCCUCCAGCGGCGGGCGGCGGGCGACGGGCGAAAUCGGCCAGCGACAGGUGGAAUCGGCUGGAGAGGUAGCGCUCGUGGGUCGCCGCUGCAGUCGCCGGAGAUCGGAGCCGGGCAGAGGCGAGCGGACAAGAACGGGCGACGCUAGGAUGGAGGAGGAGAGCCCUGCCCCGGCGUCGGCUCAGGCUUCUGCUCCCUCUCCCACUCCCGCCGCCGCUGUUGGUGGUGUAGCGCCUCUGGAUCCAGCGGGAAGGUGAAGCGCAUCAUGAAGACGCCCUAUCAGUUGGAGGUUCUCAAGAGGACUUACACAGUUAGGGCUCACAGACAAGCAGCUGCAGAUGUGGUUCUGCCACCGGCGGUUGAAGGACCGUAAACCACCGCCGAAGCGGCAGCAGCUGGAGGAGGAGGUUCAUGUGCCAGUUAUGGCGCCGCCUCCUGUGCUGCCACCACCGCUGCCACACAGCGAGCUAACAAUGGCUCCUGGUGGGAUGUAUGGCGAGCAGUUGCUGCCCUCCUCUUCCCGUAGAGGAACUGGCCGGCCAUCAGCCAUUCUUGAUAUGUCUGAUCUUCAGUGCCUCCCCCUACUCACGAGCCACGGUUAACAAAGCAUAUUGAGCACAUAAUAGAUUUGAUAACCAAGAUGGAUUGGAUUGUAUUUCUGAACUACCGGACUACAUAUGGUCCCAUUCAACAUGCUACGGUUUAUCGGAAUGUUUUGACAGAACAUACUUUUUCAGGCCUAAUAUUCUUAAUUUUACUUGUGGCCAGCGACAUUGAAGCUGAUUGAUUGUAUUCCUCAUCAAGGGAAAGCAUGGCAGAUUGUACAGCUUGAUGCACUUGACGAGAGGUACUCAUCCACUUGAUUUCUGCGUCCUCAGCGGUGAUUAUUUCCAUCUGUGCACAGGUGAGAUCUGGCUGCCUAUUUCGUUUUGUGUUAUUGGAAGCACAUCGAUCACAACUCUACAAAUUUCUCAUGUGUGUUCUGGGCAGGCUUGUUAGCUGAUAUGCACACCUCUGCUCAUCUUAAUGAUGUAACAAAUGUCGAUUUAUAUCACUAGUGCUUGGCUUUUGGGCUAUCGGUUCAUCAGUCUUUGGACAACAUUUAAUUGAUAAGCCAACAGUUUCUUAAAUAUUCUUUUUGAUGUGCUUGUAGUUUCUUAGAUUUUCUAGUUGAUAUCUUGAUUGGCUAAUAGUUCUAUGAAUGUUUUUGGUUCACACAGACAUGCGCAGAAGUGACAAUUUUUCAAUCUGUCUAGUGGCUGCUCUCAACUCUCAUGUUGAUUUGUAACGGUUAUUGCUGAAUGAAAGAUGGACUGAGAAUUUUCGUUCAGAGAAAUUAUAUUCAGAGCUCUGAGUGUCAUGUUCUCUCGGUUUGCAAGUGCAGCCCUUUUCAUAAUUUUUUAGUUUGGUCGGCUGGACAAUUAGAUACUCACAGUUGGGUCAAAAGCUCUGAAAUGUUAUGAAAAUUAUGGGGCUCAUACACAUAUGAUGCUCUAAAUGUCAAUUAGAAAUAUGUCAUUUGCAAAUUUGUGUGUUGUAUUCUCAGAAAUCUGUUCCCAUCUGAAUUUCCAUUUGUUCACUCAUAUUGGGACUAAGUCAAGCCCUGGAGAGAUGAUUCGGCUAAGGUGGGACACCACCGAUAGCGAGGAGGUCGUUCGCACCCGCAUCCCCUCAAGCACGCCGGGUCAGCACAAGGCGCGCGUGCUCCCGGCGGCUGGCCGCGGAUGGCCAGAUACAAGAGGACCACCGGCCAGCCCUCCAUGGCCGACCCGUUGCCCUCUUUCACUCCAUACCUAUCCACCACGCCGCCAUCGCCUCCGACAACCAUCGGUGUAAUACUAACUUGGUUACUACGAGAAACUCUGUGACAAGACCAAUAUGUUAUGUUGAGAAUCAUUGGUGUAAUUUAGUUACUAAGAGAAAAUGUUAAGAACCAUUAGUUUAAUAGUAACUUGGUUACUACAAAAAAUUUUGUGGCAAGAUCAAUAAGUUAUGUUGAGAAUCAUCGGUACCAUAGUAAUUUAUUUACUAAGAAA
Sequence
(XR_001545758.2):
UCUUGACACCUGCUUUGUACGGUUAUACCCCGUAUUUUUAGGAUCUGGGAGCGGCGUCGGCGGUGGCGGUGUCCUCCAGCGGCGGGCGGCGGGCGACGGGCGAAAUCGGCCAGCGACAGGUGGAAUCGGCUGGAGAGGUAGCGCUCGUGGGUCGCCGCUGCAGUCGCCGGAGAUCGGAGCCGGGCAGAGGCGAGCGGACAAGAACGGGCGACGCUAGGAUGGAGGAGGAGAGCCCUGCCCCGGCGUCGGCUCAGGCUUCUGCUCCCUCUCCCACUCCCGCCGCCGCUGUUGGUGGUGUAGCGCCUCUGGAUCCAGCGGGAAGGUGAAGCGCAUCAUGAAGACGCCCUAUCAGUUGGAGGUUCUCAAGAGGACUUACACAGUUAGGGCUCACAGACAAGCAGCUGCAGAUGUGGUUCUGCCACCGGCGGUUGAAGGACCGUAAACCACCGCCGAAGCGGCAGCAGCUGGAGGAGGAGGUUCAUGUGCCAGUUAUGGCGCCGCCUCCUGUGCUGCCACCACCGCUGCCACACAGCGAGCUAACAAUGGCUCCUGGUGGGAUGUAUGGCGAGCAGUUGCUGCCCUCCUCUUCCCGUAGAGGAACUGGCCGGCCAUCAGCCAUUCUUGAUAUGUCUGAUCUUCAGUGCCUCCCCCUACUCACGAGCCACGGUUAACAAAGCAUAUUGAGCACAUAAUAGAUUUGAUAACCAAGAUGGAUUGGAUUGUAUUUCUGAACUACCGGACUACAUAUGGUCCCAUUCAACAUGCUACGGUUUAUCGGAAUGUUUUGACAGAACAUACUUUUUCAGGCCUAAUAUUCUUAAUUUUACUUGUGGCCAGCGACAUUGAAGCUGAUUGAUUGUAUUCCUCAUCAAGGGAAAGCAUGGCAGAUUGUACAGCUUGAUGCACUUGACGAGAGGUACUCAUCCACUUGAUUUCUGCGUCCUCAGCGGUGAUUAUUUCCAUCUGUGCACAGGCUUGUUAGCUGAUAUGCACACCUCUGCUCAUCUUAAUGAUGUAACAAAUGUCGAUUUAUAUCACUAGUGCUUGGCUUUUGGGCUAUCGGUUCAUCAGUCUUUGGACAACAUUUAAUUGAUAAGCCAACAGUUUCUUAAAUAUUCUUUUUGAUGUGCUUGUAGUUUCUUAGAUUUUCUAGUUGAUAUCUUGAUUGGCUAAUAGUUCUAUGAAUGUUUUUGGUUCACACAGACAUGCGCAGAAGUGACAAUUUUUCAAUCUGUCUAGUGGCUGCUCUCAACUCUCAUGUUGAUUUGUAACGGUUAUUGCUGAAUGAAAGAUGGACUGAGAAUUUUCGUUCAGAGAAAUUAUAUUCAGAGCUCUGAGUGUCAUGUUCUCUCGGUUUGCAAGUGCAGCCCUUUUCAUAAUUUUUUAGUUUGGUCGGCUGGACAAUUAGAUACUCACAGUUGGGUCAAAAGCUCUGAAAUGUUAUGAAAAUUAUGGGGCUCAUACACAUAUGAUGCUCUAAAUGUCAAUUAGAAAUAUGUCAUUUGCAAAUUUGUGUGUUGUAUUCUCAGAAAUCUGUUCCCAUCUGAAUUUCCAUUUGUUCACUCAUAUUGGUGAGCGUUUUGACCAAAAGAGUUCCUUUAUGUAUUUGUUAUUGGCCUUUUCAAUUCACUGAAUUGCGAAAUGUUCGGUUGCAGGGACUAAGUCAAGCCCUGGAGAGAUGAUUCGGCUAAGGUGGGACACCACCGAUAGCGAGGAGGUCGUUCGCACCCGCAUCCCCUCAAGCACGCCGGGUCAGCACAAGGCGCGCGUGCUCCCGGCGGCUGGCCGCGGAUGGCCAGAUACAAGAGGACCACCGGCCAGCCCUCCAUGGCCGACCCGUUGCCCUCUUUCACUCCAUACCUAUCCACCACGCCGCCAUCGCCUCCGACAACCAUCGGUGUAAUACUAACUUGGUUACUACGAGAAACUCUGUGACAAGACCAAUAUGUUAUGUUGAGAAUCAUUGGUGUAAUUUAGUUACUAAGAGAAAAUGUUAAGAACCAUUAGUUUAAUAGUAACUUGGUUACUACAAAAAAUUUUGUGGCAAGAUCAAUAAGUUAUGUUGAGAAUCAUCGGUACCAUAGUAAUUUAUUUACUAAGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
4.67%
HE_num:
HEP:
95.12%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.72
Avg Expression:
49.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.14730746690162 | 2.94111061754865e-15 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.01235642979815 | 4.56172596202412e-13 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.08112918758741 | 1.08661174472197e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.06040224648005 | 7.00899608693698e-16 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.59475663721262 | 8.63798465558898e-06 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.59485358714161 | 8.42294495487367e-06 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.59495306296844 | 8.7200001481513e-06 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.03000959113357 | 3.53133814641391e-05 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.51249822610859 | 1.00940983910219e-07 |