Chr:
Chr5
Start:
7848167
End:
7849840
Strand:
-
Ref_name:
LOC4338157
Sequence
(XR_001546274.2):
AGUUCUGCUAAACUGUUGAUGGAAGUUCUCCAUCAUGGAACUAUUUGCCUGUACCUAUGCUAGACUGUUACUAAUAAUCAUGUUUCAGAUGUGAUAUAUUAGGUAGUUCAAUUCUCUAUACUGCAUAUACUAGAAAUCUUGUUUCAGAUGGCAGACAUUAGAAUUAUUGGUCAGAAGAUCAGACAAGUGGAGGUGUUUGUAAGGAGUUAUAGUAAUUCCUUGUAUAAGCAGUUACAGGAAAAAAAUAGAAAUAUGCCGAAUCGCCCAUUGCAGUUUAAGUUUCCAUUUAUACUAAGCGAGCUUUUGAUUUGUACAGCUCUUGCAGUAUUUAACUGAGAAUUUGUUAUUCAUGGAUGAGAAUUCUGGUAUAUGGCGUGUAACUUCAGUUUCAUUUUUUCCAGUUGACAAGAUAGGAUGACCCUUAUACUACUGACAAAAUGCAAGGAGAUGAAUAUUCCAUUAUCGUUUUUUGCACAAUGUAAGUAUCAGAAGCUGAGCACACUUGCUACCAUUUGGAUUUAUUAAUGUGUUUUAACUUCUCAUAUCAGAGCUCCUUCUUGUUAAAAUGGACAGAGAUUCCAGCUUGACAUGGCUAUUGUGCAAAGACACUUGCUUUGUGUGUCCAGAUGUGCUAUUUCCAAUGUUUCCUCCAGGAUCAGUUAUAAGCUGGUCUAGAUUCUCAGAUUUGCUCAGUAAUGCAUUCAUAUCAUUAUCGUAAUUCAUUUAUGUAUUGAUUGGUUUAAACCUUGUAUUUUGCGGGCUCUCAACAUGAAUGAAACAAGCUAAGAGUUGUAUGACAUUUAGUUGAGGACUAGUACAAAACUAUACAGCUUUCUUGUAGUUUUUUGCCGCAAGCUUUCUUGUAGUUGUAUACAUGUUUAGGGUUUAGAUGGGAUUACUUUUUACGCAUUUGCUUAAUUGUUCAAUAUAUAUUCAUACCACAUUUGCAUCCAAACAUUUGGAUUCUCUAGAUAAGAUAUAGUAGUCAGGGAGGUAUUGUUGCUUAUAUUCCACACUAUUGUUCUAAUACAUGCACGAUACAAGUUAUAUAUGCGUUACAGUACAUUUCUGAGUAAUUGAACUUAACCCACUGUUUGCAUGAAUAGAUAUUCACCCAUCUGUUUUGUUCAUGUAGUUGGUUUCUUCUGUAUUAACCAAUAAAUACUAUUUUACCAUCAAGAAAGAGGUAGAAGAAUCACACGAAGCAAGGAAGCAACAGCUGGAAGAUAUUGAAAUUUUAAAGAAGUCACCGAAGGAGACAAAUGACCUUCGUCGGCUGAUUGGCCUUAACACUCUUGUGGUUAGCCUCAUGCUGAUUCAUGCUGAGAUGACUAGUUUUGUGGUUGGUGUGAUCUGGACAUGUGACUUUGUUUUUGUUGGUGAAUGUAAACGACUAUUUGGACAAGUGACGUCAUUUUGGUCACAAUGACGUUGGCUGGAUUUUGGUCGGCGAUGAUAUGCUCAAUGUACUGAUGUUGUAUCGAUGUAAUUGAACCUGUUUUGGUUACUGAACUUGUGAUGUUUGUGUUCAUUAAUGAAUCUGUGAUUAUAUUGGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
0.61%
HE_num:
HEP:
98.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.54
Avg Expression:
81.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.04234253123789 | 5.05664434775917e-22 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.29785741599145 | 1.37097204839002e-38 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.06052097889946 | 4.81902274325467e-22 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.61847501355667 | 4.1762111267926e-05 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.77374357718523 | 3.10161351315407e-22 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.97335687260951 | 3.4556352477119e-32 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -2.13117343296855 | 2.39122769417709e-42 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.09019192221071 | 1.39619371988043e-07 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.0902780962163 | 1.56761064734455e-07 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.09038445132562 | 1.42159778079825e-07 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.02957886319555 | 3.52346091075821e-10 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.46493577866148 | 3.15885276198553e-05 |