Chr:
Chr5
Start:
7168813
End:
7169618
Strand:
-
Ref_name:
LOC4338115
Sequence
(XR_001546133.2):
AUCCUCUCUACAGUCUACACCCUUGUAAUAGCACCACCCUCUCCUCCAUCGCACCAACCAAGCACACAGUCGCUCGCUAGCGAAGCACGCGAUCUCGCAAUUCGCAAGCAAACCAACCAAACCAAGAAAACCGAGGAAGAAGGAGGCGAAAGCCAUUAGCCAUCCAUGGAGGCCAACAAGAGCAGCAAGCCGGAGAGAUCAUCAUCUCAGCCCACCCACGACGCCGUCGUCCCGGCGUCGGCGAGCGGCGGCGCUGCGGCCUCCUGCGAGGCGGGCAGGACGCCAUCGUCCGGUGGCUUGCCGUUGUCCACCGCCGCGUCGAGCGAGAAGAGGCCGGGCUCCGGCGGCGGCGGCGAGCUGCCAGGGUGGAAGCUGGACUGCCUCUGCAGGGAGUCCGGCAUGUCGGCGGCGGUCAUCAGCGGGGGAUUCCCCUGCUUCUGAUCGAGUACAACUAGGCUAGGCUCCUGUAUUUGGACGCAAGAAUUUUUGUUUGGAUCGCGUCGGAAUUCAAACUAUUCUCGGUGAAAUCUCUCUGAAAUUCUCGCGUUUCAAACAGGGCUUUGCAAAGCAUACUUUACUACGUACUUGUCUUGUCUAGUUUGGUUGUGUUGCUGUGAGCUAUGAUCCAUAUAUAUGAUAUAUGUUCAUCAUGUUCAUUUGUUUGUUUCUUUUCACUCUUAAGUAUAAGGUUGUAAGAGAUCAUGCUGAUCAAGUUCUACUGAUCUUGUAAUUCAGGUCUGCCAAUUCUUCUUAGAAAAGCUUAUGAUUAAUGAUUUAUUUUAUGGACAUAGACACACCAACCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.69%
ME_num:
MEP:
13.21%
HE_num:
HEP:
80.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.77
Avg Expression:
98.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.68880042092873 | 0.00286506823470904 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.93096647715067 | 0.0198408206255753 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.26296704605652 | 2.5043087484333e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.0333882712856 | 0.000388200448015266 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.15706425985703 | 6.66282542030838e-15 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.51256810561567 | 0.00296972073483745 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.47905999347957 | 5.25027593495715e-05 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.97476359280978 | 1.95897399827417e-21 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.87317316937429 | 9.96256453286038e-15 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.92597336371777 | 1.27967675886887e-06 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.1417817292934 | 4.53864343419738e-06 |
| 12 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.06467631998477 | 0.0150421147842065 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.41527669815953 | 5.20546343003612e-26 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.23955702096591 | 1.18380935001708e-20 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.29158145100248 | 0.00120477653166363 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | 1.52240592340595 | 1.74991748835085e-08 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.05337862771865 | 3.90949247217537e-07 |
| 18 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.05329433452576 | 4.16130622043772e-07 |
| 19 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.05322473120624 | 3.95495620747164e-07 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.01143196817385 | 4.43448542160442e-183 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.55081531979226 | 1.43288061383686e-14 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.22740151650552 | 9.37272414963424e-14 |