Chr:
Chr5
Start:
2632304
End:
2635307
Strand:
+
Ref_name:
LOC4337796
Sequence
(XR_001545726.2):
CGCCGCGUUCUUUGGCCUUCCCCUUCUCCCUGUGUCGCUUGCUCUUUCUGACUCAGCGCUCGCCCCCUCCUUCCCCCAUCUUGCGGCGAGCAGUCGCCCCGACUCCUCCACCAAACCCAAAUCGCCACCGCCAGGGACACUGACGCCUGCCUCCCCCACCGAACUGCACCUCCGGGACACUGACGCCCGCCUCGCCGAUCCCCUCACAUCCUCUGCCGCUCCCCUCGCCCCCUUCCGCGUCGUCUGCACCGCCCACGAUCUCCGCCUCGACGACCGGUUCCACAACGCCAUUCCUCACGAUCCCCUCCCGUCCUCCUCGAUUGGCGUCGCCCCCGAUCUCUCCUCGACCGCCUCCACGCAACCACCACCACCAAUCUCCGCCGAGCACUGUUCUCCACCGGAUCCCUCUCCACCGAGCCGCCGUCGGGUCGUCGGCAAUCCCUCGACCUCCUCCGGGCUGCCACCGAGUCGGGAUCCGGGAACGCGGCCGGAUCAGCGUCAACCGCCUGGCCGCUCCUCCACUCCGCCACCACCGAGGGACAUCUCCAUCUACAAAAGCCGUCCUCUCUUCCCAGCUGACCCAGAUGAUCGCCAGCUCUAUCCUGUCGGCUUCGUCUUACUGGAUGUCAUCGACCCUACCACCUACUGCCUCUAAGCCUGUCAGUUCCAUCAAGGUUUUCUUUUUCUCCUCUUCCUAUUCUCUAUUUGUGUGAUGGAAUAGGACGAAGAGGUUCAGUAAAGGGGUCAUUUUCUAUGCCCGCGCUGUCGAGAGCUGUGACGCUUGAAGUGGCGGGGUGAUGCUUGUUGCUUCUUGAACUCUCGCUAUGUGUGCAAAAAGAGGAACAGUCUGUGCUCUUCCUGCAUCAUAGGAGACGGCGCAAGGUGAUUGUGGAGGCAUGGUGGACAAUGGAAGCAUUGAGACGUGCUAGAAGGCGUGAUAUGCAAAAUUGUUGUGUAUCAUGCAUGGAUGUUUCAGGAACAUUGGGUUAAUUGUGUUGAGUAUAUAGUAUUGAGAUACUGAUUAACUAAAAUUGUCUAGGGGUGUUUAUGGUUAUGAUCAUAGUCAUAUUUACUGAUUGAUGGUAAUGUUUUAUUCUCUGAAUUUUUCUAUGGAGUACAUCAAAAUAGAUGGUUUUGGAUUGCACAAUCUGAAUUUAUUUCUCAAUGAACCAAUGCUUUGAAUUGUUAUAAUGUUGUUCAAAAUAGAUGUUUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.08%
ME_num:
MEP:
12.4%
HE_num:
HEP:
82.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.63
Avg Expression:
41.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.08386722411507 | 6.32664579543322e-10 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.46383744885748 | 2.42897656222621e-06 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.58818180303209 | 5.39726376365935e-09 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.42271450281853 | 0.020992797069528 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.39878460450108 | 2.67687105745574e-13 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.11372860301087 | 6.88041022623056e-08 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.22373422290808 | 3.64890606990949e-07 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.08672234447703 | 4.79001679895753e-07 |