OSA-LNC4337755


Function Link


Basic Info

Chr:

Chr5

Start:

2311259

End:

2321099

Strand:

-

Ref_name:

LOC4337755

Sequence
(XR_001545728.2):

UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGUAUGUAGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA

Sequence
(XR_001545730.2):

UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGGGCAAAGAAAGCAGCAGACUACUGCUGGAGUGCUGGGACUGGGAGGCCAUGUCCACCUUUCUUCUGUUGCCAAUUAAGUCCCAAUUUUGUUAGCUGCUGUGCUGUGUUGUGCUGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGUAUGUAGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA

Sequence
(XR_003242458.1):

UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA

Sequence
(XR_003242459.1):

UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGGGCAAAGAAAGCAGCAGACUACUGCUGGAGUGCUGGGACUGGGAGGCCAUGUCCACCUUUCUUCUGUUGCCAAUUAAGUCCCAAUUUUGUUAGCUGCUGUGCUGUGUUGUGCUGUGCGUGCGUGCGUGCAUGUGCACCUCAUUUUCUCCCACCUGCAAGAUUUUAUGUGUCAGACCUAAGUAUUGUCCUUUAUUUCUCUUGCUUUUCAGGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGUAUGUAGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

295

LEP:

59.96%

ME_num:

183

MEP:

37.2%

HE_num:

13

HEP:

2.64%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.83

Avg Expression:

3.30

Tip: OSA-LNC4337755 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-4.387713666059197.53045693026347e-07
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.221060087740231.19873321849888e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.813174616521370.000306683908262811
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.383974966094886.26980635594851e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.46947131327980.0178964493560632
6Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae1.917004127009830.0140557488131738
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.239837844867140.0339614231877543