Chr:
Chr5
Start:
2311259
End:
2321099
Strand:
-
Ref_name:
LOC4337755
Sequence
(XR_001545728.2):
UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGUAUGUAGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA
Sequence
(XR_001545730.2):
UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGGGCAAAGAAAGCAGCAGACUACUGCUGGAGUGCUGGGACUGGGAGGCCAUGUCCACCUUUCUUCUGUUGCCAAUUAAGUCCCAAUUUUGUUAGCUGCUGUGCUGUGUUGUGCUGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGUAUGUAGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA
Sequence
(XR_003242458.1):
UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA
Sequence
(XR_003242459.1):
UUCUCCUUCCUGCUUCCUCCGCUUCGAGGGGACGCAACACAACCGCCGGUGCGGCGCCGGAGGAGAGGGGAGCGCGCGCGCCGCCGCCGCCACCGAAUGCCGCAGCACGCGCGACUCGCCGCCUUCCUCCCACCCACCGGCCGAGAUACAUCCAAUUAUACAGCUCAUAUGUCCAAGCAGACACAGGAUAUAAACAAAGGAAAUUAAAGCACAUAUGCCACAUAAGUUGACACAUCAGGGGGCAAAGAAAGCAGCAGACUACUGCUGGAGUGCUGGGACUGGGAGGCCAUGUCCACCUUUCUUCUGUUGCCAAUUAAGUCCCAAUUUUGUUAGCUGCUGUGCUGUGUUGUGCUGUGCGUGCGUGCGUGCAUGUGCACCUCAUUUUCUCCCACCUGCAAGAUUUUAUGUGUCAGACCUAAGUAUUGUCCUUUAUUUCUCUUGCUUUUCAGGUAAGUCACUGGAUCACUUGUCUCUGUGGAAAAGCUCCCCGUCAAUCAUCACAGUUGGGGUCCUGGGGAAAAAGAAGUGGUGGCAUCAGAUGUUGGUAUUCCAGGACAGAGGGCAUCUUCUCCCCUUUGUUUACCAUGGGCAUGCAGCUAGAUACCCUAGCAAUUUUCAUUCGGAAAUCCGUAUCUGCUUCUCCAAUCCGAGAUGAAGCACGUUGAGCGUGUCUGUGGUGAUCAGUUCUUCAGAACGGUGAGCUUCCCCAUAAUUGCACAGAUAAUUGCGCAGGUACAGGAAUAAUGAUUUGUCUGCUGACUGUCUCUGCCGUCAAUGGGAACACCGAUCGGUCGAUCGAUUGAUCAUUGUGGAGAGGCCGGUUGUGUUUCUUGGAAUUUAGAAGUACUGGAAAAAAAGAAAAGAAAAGAUGCAAGGGCCUGGAGGACAGAGACAAAAACAUUUGGAGUUAUAGUAUUCAUCCCAAAUGAGCUAGUCAAUGCAAGUAUUAUGGCCUGGUAUCCUGAUGAAAGGAAAAGGGGGAAAAGUUUAAUCCAUGAUUCCAUGAUUAGGAUUGUAAUGGCAUCCAUCCCCCCUCCUGUGCCCAUGUGACAGCGGAUACUCAUCCCCCCCAUUAAACAUUAAACAAGCGCGCGGCGAAUCAAAAGGCAUUGAUUGAUGAUUUUAUAAUCUGGUUUCCAGCUGAUCAUCCUUGUCCUUUGAUUCCUCAUGCAGACGGAUCCCAUCCGUUCUGGAGGCUUGCAUUGUCUGUUGUGGUAUAUAUGCAUUUGUACUAUAUGUUUUUUCUGGAGAUUUUUGGAGCAAUUAGCACAUCGCCGGUGUCUGUAUGUAUGUAGACGCUCAUCAGCUGCAUGCAGGAGCUAGCCGGGGAAAAAGGACUUUCUGGUGACAGCCUGACCUUCUCUGCUUUGGCAAUUGGCACAGGUCCGUUUCAUUCAUCUCAUCUCUCUUCCCCUCGUUCUUGGGCACAAGUCAGAAUUGUACAGUUGCAGCUCACAGGACAGCAGAUGAAUAUAUAUGCAGCUAAUAAUCCAAUUAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.96%
ME_num:
MEP:
37.2%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.83
Avg Expression:
3.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.38771366605919 | 7.53045693026347e-07 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.22106008774023 | 1.19873321849888e-07 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.81317461652137 | 0.000306683908262811 |
4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.38397496609488 | 6.26980635594851e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.4694713132798 | 0.0178964493560632 |
6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.91700412700983 | 0.0140557488131738 |
7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.23983784486714 | 0.0339614231877543 |