Chr:
Chr4
Start:
32296080
End:
32296734
Strand:
-
Ref_name:
LOC4337128
Sequence
(XR_001545038.2):
GUCAGGAGCAGGUGCAGUGAAUAGUUGGUUGAAUACAGCCGCCAAUCCAGCAUCAAAACCGAUGGUUUUGGAACACGACGGAAUAUCACUAUGCUCUCCCUGUAUAUAUACGCUUACCAGCAUUAAGCUUUGUACGUGCAAGAAACUUCAAAGGUGGUAAAGAUUAAUCUCUGAGUUUGAGCGAUCGAUCCAUCGACCGAUGAGCCUGAGGUACGCGAGCAGGGUGUUGCUGAGAGCGGCGGCGCAGGCCAUGAGGGCCGCGAGGCAGCCGGCGCCUGCGGUGGCCAAGCCGGUGCCAGCGGCGAAGCCAUCGGCGGUGGCGCCAGGCACGGCUCAGCGGCAGCAGGCGAAGCGGCUCUCCGGUGGCGUGGCUGAGCCGGCGGAGAAGGCGGCCGUGGCGGAGAGGAUGAGGCGGCGGCGCAGGGAGAAGUCCGAGAAUGUGAUGCAGCUCGUGUGCUGGGGACCCAGUUAGCCGCGAUGCUUCUGUUGCUGCUGUAGUGCUGUGACAUCAGUUGAGCAGAGUGACUAGUGUGAUUUGUGCCUUAUGUUCGUUUCCUUUUGUAAGAUGGUAGAAUCUGUGAAAUUUUGACGGUAUUGUAUUCUGCAAGAUGCUAUGAAAUAGUGAAGUACUGUUCCUUUUCUGAAAUUUUGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.48%
ME_num:
MEP:
41.26%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.90
Avg Expression:
29.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 7.02002010326897 | 1.50645561519571e-37 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.99489917106011 | 1.21217889334266e-34 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.88145396963974 | 1.42537297617359e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.91202770936284 | 4.40876806022316e-34 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.89109760887242 | 8.67345450020551e-26 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.31778602527804 | 2.99635977024693e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.81643548696432 | 0.000493650768926024 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 6.50458915356456 | 2.32305445149836e-32 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.50584224796357 | 2.49625943071617e-22 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.89875498329933 | 0.0310640752519488 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.90632474545934 | 0.0113899015554682 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.16694354586891 | 1.2355946452409e-28 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.12096635697531 | 0.00184300857706572 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.56355229202612 | 0.00067228561326805 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.80276928644905 | 1.28444325099262e-36 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.88484219281195 | 0.0180978531748026 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.72923253612985 | 0.00442579129576713 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 5.64828599303377 | 0.0018388486648587 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.32965784753139 | 0.0427798599261576 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 7.09974399123162 | 1.18300796678646e-07 |
| 21 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.91118090722299 | 0.0209314742044699 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.83025261408122 | 2.61352642337378e-25 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.80613086939 | 2.38054696989846e-10 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.97166589279939 | 0.000284518361634839 |